| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,903,914 – 20,904,005 |
| Length | 91 |
| Max. P | 0.544007 |
| Location | 20,903,914 – 20,904,005 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.65 |
| Shannon entropy | 0.36772 |
| G+C content | 0.42444 |
| Mean single sequence MFE | -23.79 |
| Consensus MFE | -13.45 |
| Energy contribution | -13.81 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20903914 91 - 24543557 ------------AUUUAUGCGCAUUUGUG----CCAUGCGUUCAGCUAUUUCCAGAUGAGCGCUCCGCU-----UGUGUGCAAUAUUACAAAAUCAUUUU-C-AAACCGCACUC ------------.....(((((((..(((----....(((((((.((......)).)))))))..))).-----.)))))))..................-.-........... ( -24.10, z-score = -2.24, R) >droSim1.chr3L 20264301 91 - 22553184 ------------AUUUAUGCGCAUUUGUG----CCAUGCGUUCAGCUAUUUCCAGAUGAGCGCUCCGCU-----UGUGUGCAAUAUUACAAAAUCAUUUU-C-AAACCGCACUC ------------.....(((((((..(((----....(((((((.((......)).)))))))..))).-----.)))))))..................-.-........... ( -24.10, z-score = -2.24, R) >droSec1.super_11 800715 91 - 2888827 ------------AUUUAUGCGCAUUUGUG----CCAUGCGUUCAGCUAUUUCCAGAUGAGCGCUCCGCU-----UGUGUGCAAUAUUACAAAAUCAUUUU-C-AAACCGCACUC ------------.....(((((((..(((----....(((((((.((......)).)))))))..))).-----.)))))))..................-.-........... ( -24.10, z-score = -2.24, R) >droEre2.scaffold_4784 20592585 91 - 25762168 ------------AUUUAUGCGCAUUUGUG----CCAUGCGUUCAGCUAUUUCCAGAUGAGCGCUCCGCU-----UGUGUGCAAUAUUACAAAAUCAUUUU-C-AAACCGCACUC ------------.....(((((((..(((----....(((((((.((......)).)))))))..))).-----.)))))))..................-.-........... ( -24.10, z-score = -2.24, R) >droYak2.chr3L 4562375 91 + 24197627 ------------AUUUAUGCGCAUUUGUG----CCAUGCGUUCAGCUAUUUCCAGAUGAGCGCCCCGCU-----UGUGUGCAAUAUUACAAAAUCAUUUU-C-AAACCGCACUC ------------.....(((((((..(((----....(((((((.((......)).)))))))..))).-----.)))))))..................-.-........... ( -23.40, z-score = -2.29, R) >droAna3.scaffold_13337 14512085 91 + 23293914 ------------AUUUAUGCGCAUUUGUG----CCAUGCGUUCAGCAAUUUCCAGCUGAGCGCUCCGUU-----UGUGUGCAAUAUUACAAAAUCAUUUU-G-AAACCGCACUC ------------.....(((((((....(----(...(((((((((........)))))))))...)).-----.)))))))......((((.....)))-)-........... ( -26.70, z-score = -2.65, R) >dp4.chrXR_group6 12080527 98 + 13314419 ------------AUUUAUGCACAUUUGUG---CCCGUGCGUUCAACCAUUUACAGCUGAGCGCAUCGCUUCGACUGUGUGCAGCAUUACAAAAUCAUUUUGC-AAACCGCACUC ------------......((((....)))---)..(((((..............((((.((((((((...))).))))).))))....((((.....)))).-....))))).. ( -25.40, z-score = -1.29, R) >droPer1.super_12 491606 98 + 2414086 ------------AUUUAUGCACAUUUGUG---CCCGUGCGUUCAACCAUUUACAGCUGAGCGCAUCGCUUCGACUGUGUGCAGCAUUACAAAAUCAUUUUGC-AAACCGCACUC ------------......((((....)))---)..(((((..............((((.((((((((...))).))))).))))....((((.....)))).-....))))).. ( -25.40, z-score = -1.29, R) >droMoj3.scaffold_6654 576991 91 + 2564135 ------------GUGUGUGUGAGUUAUGGAAUGUUGUAUGUUGAACAAUUUCCAGCUGAGCGCAUCGCU---------UGUAAUAUUACAAAAUAAUUUUC--AAACCGCAUUC ------------((((((((.(((..(((((.(((((.......)))))))))))))..))))).)))(---------((((....)))))..........--........... ( -18.80, z-score = -0.35, R) >droGri2.scaffold_15110 2911720 105 - 24565398 GUAUAUGUGUGUGUGUAUGUGAGUUAUGGAAUGUUAUGUGUUGAACAAUUUCCAGGCGAGCGCUUCGCU---------UGUAAUAUCACAAAAUAAUUUCCCAAAACCGCAUUC ((((((......))))))(((.(((.(((...(((((...(((......((.((((((((...))))))---------)).)).....))).)))))...))).)))))).... ( -21.80, z-score = -0.20, R) >consensus ____________AUUUAUGCGCAUUUGUG____CCAUGCGUUCAGCUAUUUCCAGAUGAGCGCUCCGCU_____UGUGUGCAAUAUUACAAAAUCAUUUU_C_AAACCGCACUC .................(((((((.............(((((((.(........).)))))))............)))))))................................ (-13.45 = -13.81 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:05 2011