| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,896,058 – 20,896,151 |
| Length | 93 |
| Max. P | 0.525377 |
| Location | 20,896,058 – 20,896,151 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.99 |
| Shannon entropy | 0.49897 |
| G+C content | 0.41827 |
| Mean single sequence MFE | -16.09 |
| Consensus MFE | -9.28 |
| Energy contribution | -10.23 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20896058 93 - 24543557 UCAGAGUAUGCUAAUGGCACCCC-AAACAGAAAUUAAAUUUCCAUUAGCCUUUACAA-----------CCAUUGCUCACUCAAAAUAAAAGCACCGCCACUUAUA--------- ...(((((.((((((((......-.................))))))))........-----------....)))))............................--------- ( -11.42, z-score = -1.14, R) >droSim1.chr3L 20255085 104 - 22553184 UCAGAGUAUGCUAAUGCCACCCC-AAACAGAAAUUAAAUUUCCAUUAGCCUUUACAACGCCGAGGAGGCCAAUGCUCGCCCAAAAUAAAAGCACCUCCACUUAUA--------- ...((((..(((((((.......-.....(((((...))))))))))))..............(((((....((((.............)))))))))))))...--------- ( -17.62, z-score = -1.52, R) >droSec1.super_11 792504 108 - 2888827 UCAGAGUAUGCUAAUGCCACCCC-AAACUGAAAUUAAAUUUCCAUUAGCCUUUACAACGCCGAGGAGGCCAAUGCUCAC-CAAAAUAAAAGCACCUCCACUUACUAUAUA---- ...((((..(((((((.......-.....(((((...))))))))))))..............(((((....((((...-.........)))))))))))))........---- ( -17.70, z-score = -1.68, R) >droYak2.chr3L 4554045 105 + 24197627 UCAGAGUAUGCUAAUGCCCCCCCAAAACAGAAAUUAAAUUUCCAUUAGACUUUACAACGCCGAGGUGGCCAGUGUUCACCCGAAAUAAGAGCACCUUCACUUAUA--------- .....(((..((((((.............(((((...)))))))))))....))).......((((((...((((((...........))))))..))))))...--------- ( -15.71, z-score = -0.43, R) >droEre2.scaffold_4784 20584726 96 - 25762168 UCAGAGAAUGCUAAUGCCGCC---ACGCAGAAAUUAAAUUUCCAUUAGCCUUUACAGCGCCGAGGAGGCCAAUGCUCAGCUAAAAUAAAAGCACUUAUA--------------- ...(((...(((((((..((.---..)).(((((...)))))))))))).......(.(((.....))))....))).(((........))).......--------------- ( -17.70, z-score = 0.30, R) >droAna3.scaffold_13337 14505197 112 + 23293914 ACAGAA-AUGCUAAUGUUACCCC-AAACAGAAAUUAAAUUUCCAUUAGUUUUUACAAUGCCGAGGAGGCCGACUCCUCUUCUCCAUCGACGCACAACGAACACCCCCAAACACA ..((((-..(((((((.......-.....(((((...))))))))))))............((((((.....))))))))))...(((........)))............... ( -16.40, z-score = -1.31, R) >consensus UCAGAGUAUGCUAAUGCCACCCC_AAACAGAAAUUAAAUUUCCAUUAGCCUUUACAACGCCGAGGAGGCCAAUGCUCACCCAAAAUAAAAGCACCUCCACUUAUA_________ ...(((((((((((((.............(((((...)))))))))))).........(((.....)))..))))))..................................... ( -9.28 = -10.23 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:03 2011