Locus 8192

Sequence ID dm3.chr3L
Location 20,895,071 – 20,895,175
Length 104
Max. P 0.979977
window11261

overview

Window 1

Location 20,895,071 – 20,895,175
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 87.09
Shannon entropy 0.19384
G+C content 0.39835
Mean single sequence MFE -29.05
Consensus MFE -23.87
Energy contribution -23.94
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -2.65
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.04
SVM RNA-class probability 0.979977
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 20895071 104 - 24543557
AGCAGACAGCUGAAAUAAGAUGAUAUAUCGCUUAUGAUGAUAUAUCGCUUAUUUUGGUAUUAGUAAUGAUAUUGGCCAGGGAUAUUCGCCUGGUUGAUUGCCCU
.((((...((..(((((((.(((((((((((....).)))))))))))))))))..))((((....)))).(..(((((((.....).))))))..)))))... ( -37.10, z-score =  -4.42, R)
>droSec1.super_11 791533 87 - 2888827
AGCAGACAGCUGAAAUAAGAUGAUAU-----------------AUCGCUUAUUUUGGUAUUAGUAAUAAUAUUAGCCAGGGAUAUUCGCCUGGUUGAUUGCCCU
.((((...((..(((((((.(((...-----------------.))))))))))..))((((....)))).((((((((((.....).)))))))))))))... ( -26.90, z-score =  -3.05, R)
>droYak2.chr3L 4553077 87 + 24197627
AGCAGACAGCUGAAAUAAGAUGAUGU-----------------AUCGCUUAUUUUGGUAUUAGCCAUGGUAUUGGCCAGGGAUAUUCGCCUGGUUGAUUGCCCU
.((.((..((..(((((((.(((...-----------------.))))))))))..)).)).))...(((((..(((((((.....).))))))..).)))).. ( -28.50, z-score =  -2.12, R)
>droEre2.scaffold_4784 20583781 87 - 25762168
AGCAGACAGCUGAAAUAAGAUGAUAU-----------------AUCGCUUAUUGUGGUAUUAGUAAUGCUAUUGGCCAGGGAUAUUCGCCUGGUUGAUUGCCCU
(((.....)))........((...((-----------------(((((.....)))))))..))...((.((..(((((((.....).))))))..)).))... ( -23.70, z-score =  -1.02, R)
>consensus
AGCAGACAGCUGAAAUAAGAUGAUAU_________________AUCGCUUAUUUUGGUAUUAGUAAUGAUAUUGGCCAGGGAUAUUCGCCUGGUUGAUUGCCCU
.((((...(((((((((((.((((...................))))))))))))))).............((((((((((.....).)))))))))))))... (-23.87 = -23.94 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:02 2011