| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,877,759 – 20,877,858 |
| Length | 99 |
| Max. P | 0.720604 |
| Location | 20,877,759 – 20,877,858 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.39 |
| Shannon entropy | 0.40164 |
| G+C content | 0.49829 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -15.80 |
| Energy contribution | -17.05 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20877759 99 + 24543557 CGCCUUUCAGUACGUCUGUGUAUGUGAGUGUGUGUGCGCGCUAGUGCCUUUGAGUUGUUCCAAACUCUGGCUUUAAUUGCUGGCAAUUUGUCAGGCUAA .((((..(((.......(((((..(......)..)))))(((((((((...(((((......))))).))).......))))))...)))..))))... ( -31.11, z-score = -2.00, R) >droSim1.chr3L 20235037 91 + 22553184 CGCCUUUCAGUACGC--------GCGUGUGUGUGUGCGCGCUAGUGCCUUUGAGUUGUUCCAAACUAUGGCUUUAAUUGCUGGCAAUUUGUCAGGCUAA .((((..((((((((--------((....))))))))..(((((((((....((((......))))..))).......))))))....))..))))... ( -32.11, z-score = -1.99, R) >droSec1.super_11 774410 91 + 2888827 CGCCUUUCACUACGC--------GCGUGUGUGUGUGUGCGCUACUGCCUUUGAGUUGUUCCAAACUCUGGCUUUAAUUGCUGGCAAUUUGUCAGGCUAA .((((..((....((--------(((..(....)..)))))...((((...(((((......))))).(((.......)))))))...))..))))... ( -28.80, z-score = -1.80, R) >droAna3.scaffold_13337 14488551 85 - 23293914 CGCCUGGCAGCCCCA--------AUCAGCCCCAGUGAGCCUCA----UUUAGUUUCGUUCUGG--CCUGGCUUUAAUUGCCAGCAAUUUGUCAGGCUAA .(((((((((((..(--------((.(((...((((.....))----))..)))..)))..))--)(((((.......))))).....))))))))... ( -27.30, z-score = -1.75, R) >consensus CGCCUUUCAGUACGC________GCGAGUGUGUGUGCGCGCUAGUGCCUUUGAGUUGUUCCAAACUCUGGCUUUAAUUGCUGGCAAUUUGUCAGGCUAA .((((..((..............((((((......))))))...((((...(((((......))))).(((.......)))))))...))..))))... (-15.80 = -17.05 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:01 2011