| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,855,220 – 20,855,270 |
| Length | 50 |
| Max. P | 0.993733 |
| Location | 20,855,220 – 20,855,270 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 95.67 |
| Shannon entropy | 0.07421 |
| G+C content | 0.43262 |
| Mean single sequence MFE | -13.82 |
| Consensus MFE | -13.48 |
| Energy contribution | -13.48 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.64 |
| SVM RNA-class probability | 0.993733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20855220 50 + 24543557 --AGAUAUAGCUAUCCCCAUAUCUGUUUACGAGCCAGAAGAUGGAUAUGGAG --.((((....)))).((((((((((((.(......).)))))))))))).. ( -14.00, z-score = -2.68, R) >droSim1.chr3L 20211877 50 + 22553184 --AGAUAUAGCCAUCCCCAUAUCUGUUUACGAGCCAGAAGAUGGAUAUGGAG --..............((((((((((((.(......).)))))))))))).. ( -13.50, z-score = -2.76, R) >droSec1.super_11 752039 50 + 2888827 --AGAUAUAGCCAUCCCCAUAUCUGUUUACGAGCCAGAAGAUGGAUAUGGAG --..............((((((((((((.(......).)))))))))))).. ( -13.50, z-score = -2.76, R) >droEre2.scaffold_4784 20542985 50 + 25762168 --AGAUAUAGCCAUCCCCAUAUCUGUUUACGAGCCAGAAGAUGGAUAUGGAG --..............((((((((((((.(......).)))))))))))).. ( -13.50, z-score = -2.76, R) >droAna3.scaffold_13337 14465422 52 - 23293914 AAGGAUAUAGCUAUCGCCAUAUCUGUUUACGAGCCAGAAGAUGGAUAUGGAG ...((((....)))).((((((((((((.(......).)))))))))))).. ( -14.60, z-score = -2.49, R) >consensus __AGAUAUAGCCAUCCCCAUAUCUGUUUACGAGCCAGAAGAUGGAUAUGGAG ................((((((((((((.(......).)))))))))))).. (-13.48 = -13.48 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:01 2011