Locus 819

Sequence ID dm3.chr2L
Location 5,922,663 – 5,922,754
Length 91
Max. P 0.827832
window1110

overview

Window 0

Location 5,922,663 – 5,922,754
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 99.45
Shannon entropy 0.00892
G+C content 0.25549
Mean single sequence MFE -10.70
Consensus MFE -10.70
Energy contribution -10.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.31
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.82
SVM RNA-class probability 0.827832
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 5922663 91 - 23011544
UAUUAAAUUGUAUUUUUCAAACUUCGCAUGCCGUAAUAUGUAUGCUUUCUAUCUCACACACUAACAAUAAAUAUAUAUUUUUAUGUUUACG
.........................((((((........))))))......................((((((((......)))))))).. ( -10.70, z-score =  -1.54, R)
>droYak2.chr2L 9050280 91 + 22324452
UAUUAAAUUGUAUUUUUCAAACUUCGCAUGCCGUAAUAUGUAUGCUUUCUAUCUCACACACUAACAAUAAAUAUAUAUUUUUAUGUUUACG
.........................((((((........))))))......................((((((((......)))))))).. ( -10.70, z-score =  -1.54, R)
>droEre2.scaffold_4929 6007831 91 - 26641161
UAUUAAAUUGUAUUUUUCAAACUUCGCAUGCCGUAAUAUGUAUGCUUUCUAUCUCACACACUAACAAUAAAUAUAUAUUUUUAUGUUUACG
.........................((((((........))))))......................((((((((......)))))))).. ( -10.70, z-score =  -1.54, R)
>droSim1.chr2L 5709843 91 - 22036055
UAUUAAAUUGUAUUUUUCAAACUUCGCAUGCCGUAAUAUGUAUGCUUGCUAUCUCACACACUAACAAUAAAUAUAUAUUUUUAUGUUUACG
.........................((((((........))))))......................((((((((......)))))))).. ( -10.70, z-score =  -0.64, R)
>consensus
UAUUAAAUUGUAUUUUUCAAACUUCGCAUGCCGUAAUAUGUAUGCUUUCUAUCUCACACACUAACAAUAAAUAUAUAUUUUUAUGUUUACG
.........................((((((........))))))......................((((((((......)))))))).. (-10.70 = -10.70 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:07 2011