| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,852,916 – 20,853,020 |
| Length | 104 |
| Max. P | 0.580456 |
| Location | 20,852,916 – 20,853,020 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 63.79 |
| Shannon entropy | 0.67005 |
| G+C content | 0.62965 |
| Mean single sequence MFE | -36.42 |
| Consensus MFE | -14.85 |
| Energy contribution | -16.77 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20852916 104 - 24543557 GGCGGAGCUGCACCCGUUUCCGGAUCCGGAGCAGCUG-GCUUCCCAUCCAGCUCUAGCUCCAUCUCGAGCUCCUUGGGGCCGGGCAAACCUGUCAAUUUGCAACU ((((((((((.....(((.(((....))))))(((((-(........)))))).)))))))..((((.((((....)))))))).......)))........... ( -39.40, z-score = -0.86, R) >droSec1.super_11 748801 104 - 2888827 GGCGGAGCUGCACCCGGUUCCGGAUCCGGAGCAGCUG-UCUUCCCAUCCAGCUCUAGCUCCAUCUCGAGCUCCUUGGGGCCGGGCAAACCUGCCAAUUUGCAACU (((((((((((..((((........)))).))))))(-((((((((...(((((.((......)).)))))...)))))..))))....)))))........... ( -42.70, z-score = -1.71, R) >droSim1.chr3L 20208597 104 - 22553184 GGCGGAGCUGCACCCGGUUCCGGAUCCGGAGCAGCUG-GCUUCCCAUCGAGUUCUAGCUCCAUCUCGAGCUCCUUGGGGCCGGGCAAACCUGCCAAUUUGCAACU (((((...(((.....((((((....))))))..(((-((..((((..((((((.((......)).))))))..))))))))))))...)))))........... ( -44.60, z-score = -1.66, R) >anoGam1.chr2L 17227063 87 + 48795086 ACACUCAUCGCGACCGUCGACGAACCGUCCGCGCUGGCGCUUGCCGCCGGGCC-------------GAAACAAUCGCAAC--AACAGUCGUACUA--CAACAAC- .........(((((.((.(.......(((((.((.(((....))))))))))(-------------((.....)))...)--.)).)))))....--.......- ( -22.40, z-score = 0.31, R) >droEre2.scaffold_4784 20539934 92 - 25762168 GGAGGAGCAGCACCCGGUUCCGGAUCCGGAGCAGCUG-GCUUCCCAUCCAGCUCC------------AGCUCCUUGGGACCCGGCAAACCCGCCAAUCUGCAACU ..((..((((.....(((((((....)((((((((((-(........))))))..------------.)))))..)))))).(((......)))...))))..)) ( -36.60, z-score = -1.28, R) >droAna3.scaffold_13337 14462318 86 + 23293914 UCCGGAGCCGGAGCCGGAUCCGGGGC---AACAGCUG-GCUCCCCCUCCUCCCC---------------AUCGUCCGGCCUUGGCAAACCUGCCAAUUUGCAAAU ((((....))))(((((((..((((.---...((..(-(.....))..))))))---------------...))))))).((((((....))))))......... ( -32.80, z-score = -0.87, R) >consensus GGCGGAGCUGCACCCGGUUCCGGAUCCGGAGCAGCUG_GCUUCCCAUCCAGCUCU___________GAGCUCCUUGGGGCCGGGCAAACCUGCCAAUUUGCAACU (((((((((((..(((....))).......))))))..((((((((...((((..............))))...)))))...)))....)))))........... (-14.85 = -16.77 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:00 2011