| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,849,951 – 20,850,068 |
| Length | 117 |
| Max. P | 0.976856 |
| Location | 20,849,951 – 20,850,068 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.31 |
| Shannon entropy | 0.36021 |
| G+C content | 0.35094 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -16.54 |
| Energy contribution | -17.80 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20849951 117 + 24543557 GCAAAGUAAACUAAUCCAUUUAUGUGAAUAAUUUAAGGUACUCAGCUUUUAAUGUAUUCACAUUUUGGAGGAGGGUGGAAAAUGUUCGCCACACAAUUUGUGGUAAAUUUAUUCAAC ......((..((..((((...(((((((((....(((((.....))))).....)))))))))..))))..))..))(((...(((..(((((.....)))))..)))...)))... ( -31.80, z-score = -3.66, R) >droAna3.scaffold_13337 14459259 106 - 23293914 GCAAAGUAGAUUAAUCCAUUAAGGUGAGUGAUUGCUGGUACUUUCACUUUAAUGUCUUGUCAUUUUUCUCGAGGCGUGAAGACGAUCUGGUGGGAGUUUAUUUUGC----------- ((((((((((((..(((((((.(((((((((..(......)..))))))..((((((((..........)))))))).......))))))))))))))))))))))----------- ( -30.30, z-score = -2.31, R) >droEre2.scaffold_4784 20537123 117 + 25762168 GCAAAGUAAACUAAUCCAUUUGCGUGAAUAAUUUAAGGUACUUAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGCAAAAUGUUUGCCACACAAUUUGUGGCAAAUUCAGUCAAC .....(((..((..(((......(((((((....(((((.....))))).....))))))).....)))..))..))).....((((((((((.....))))))))))......... ( -32.00, z-score = -3.12, R) >droYak2.chr3L 4507462 117 - 24197627 GCAAAGUAAACUAAUCCAUUUGCGUGAAUAAUUUAAGGUACUCAGCUUUUAAUGUAUUCACAUUGCGGAGGAGGGUGGAAAAUGUUUGCCACACAGUUUGUGGUAAAUUUAUUAAAC ....(((((.(((.(((.((((((((((((....(((((.....))))).....)))))))...))))))))...))).....((((((((((.....))))))))))))))).... ( -30.10, z-score = -2.37, R) >droSec1.super_11 745677 117 + 2888827 GCAAAGUAAACUAAUCCAUUUACGUGAAUAAUUUAAGGUACUCAGCCUUUAAUGUAUUCACAUUUCGGAGGAGGGUUGAAAAUGUUUGCCUCACAAUUUGUGGUAAAUUUAUUCAAC ..........((..(((......(((((((....(((((.....))))).....))))))).....)))..)).((((((...(((((((.((.....)).)))))))...)))))) ( -30.00, z-score = -3.11, R) >droSim1.chr3L 20205340 117 + 22553184 GCAAAGUAAACUAAUCCAUUUACGUGAAUAAUUUAAGGUACUCAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGGAAAAUGUUUGCCGCACAAUUUGUGGUAAAUUUAUUCAAC ......((..((..(((......(((((((....(((((.....))))).....))))))).....)))..))..))(((...((((((((((.....))))))))))...)))... ( -28.20, z-score = -2.43, R) >consensus GCAAAGUAAACUAAUCCAUUUACGUGAAUAAUUUAAGGUACUCAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGGAAAAUGUUUGCCACACAAUUUGUGGUAAAUUUAUUCAAC ..........((..(((......((((((((((.(((((.....))))).))).))))))).....)))..))..........((((((((((.....))))))))))......... (-16.54 = -17.80 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:58 2011