| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,833,804 – 20,833,902 |
| Length | 98 |
| Max. P | 0.853965 |
| Location | 20,833,804 – 20,833,902 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 72.25 |
| Shannon entropy | 0.60118 |
| G+C content | 0.54172 |
| Mean single sequence MFE | -34.07 |
| Consensus MFE | -16.87 |
| Energy contribution | -15.61 |
| Covariance contribution | -1.26 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.853965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20833804 98 + 24543557 -----UUCAUUUUCAACCGUGAAUACCGCGUGCUGGGACUGCUGCUGCUGUUGCGUCUUGCACUCGGCUGCCACGGUGGAGAUGUCCGUGAUGUCCGCGUCCA -----..((((((((.(((((....(((.((((.(((((.((.((....)).))))))))))).)))....)))))))))))))...(.((((....))))). ( -38.10, z-score = -1.88, R) >droSim1.chr3L 20189480 98 + 22553184 -----UUCAUUUUCAACCGUGAGUACCGCGUGCUGGGACUGCUGCUGCUGCUGGGUCUUGCACUCGGCUGCUACGGUGGAGAUAUCCGUAAUGUCCGCGUCCA -----...(((((((.((((.(((((((.((((.((((((...((....))..)))))))))).))).)))))))))))))))...(((.......))).... ( -34.20, z-score = -0.76, R) >droSec1.super_11 729492 98 + 2888827 -----UUCAUUUUCAACCGUGAGUACCGCGUGCUGGGACUGCUGCUGCUGCUGCGUCUUGCACUCGGCUGCCACGGUGGAGAUGUCCGUAAUGUCCGCGUCCA -----..((((((((.(((((.((((((.((((.(((((.((.((....)).))))))))))).))).))))))))))))))))..(((.......))).... ( -40.30, z-score = -2.30, R) >droEre2.scaffold_4784 20521189 98 + 25762168 -----UGAAUUUUCAACCAUGAAUACCGCGUGCUGGGACUGCUGCUGCUGCUGCGUCUUGCACUCGGCUGCUACGGUGGAGAUGUCCGUGAUGUCCGCGUCCA -----...(((((((.((.......(((.((((.(((((.((.((....)).))))))))))).))).......)))))))))(..((((.....))))..). ( -31.74, z-score = -0.44, R) >droYak2.chr3L 4491632 98 - 24197627 -----UGAAUUCUUAACAGUAAAUACCGCGUGCUGGGACUGCUGCUGCUGCUGCGUCUUGCACUCGGCUGCCACGGUGGAGAUGUCCGUGAUGUCCGCGUCCA -----.....((((.((.((.....(((.((((.(((((.((.((....)).))))))))))).))).....)).)).))))((..((((.....))))..)) ( -29.90, z-score = 0.40, R) >droAna3.scaffold_13337 14444376 101 - 23293914 --UAAACUUCUCUUAGAGAUCUUUACUGUGUGCUGGUUUGGCUGUUGCUGUUGUGUUUUGCACUCGGCGGCUACGGUCGAUAUAUCUGUGAUGUCUGCAUCCA --((((..((((...))))..))))..(..(((......((((((.(((((((.((.....)).))))))).))))))(((((.......))))).)))..). ( -27.90, z-score = -1.51, R) >dp4.chrXR_group6 11999832 100 - 13314419 ---UAAAAGUGUAAGGCCCUCACCACCGUGUGCUGAGACUGCUGCUGUUGCUGGGUCUUGCACUCGGCGGCCGCCGUGGAGAUGUCGGUGAUGUCUCCAUCCA ---....(((((((((((((((.(((...))).))).......((....)).))))))))))))((((....))))((((((((((...)))))))))).... ( -41.40, z-score = -2.28, R) >droPer1.super_12 410480 100 - 2414086 ---UAAAAGUGUAAGGCCCUCACCACCGUGUGCUGAGACUGCUGCUGUUGCUGGGUCUUGCACUCGGCGGCCGCCGUGGAGAUGUCGGUGAUGUCUCCAUCCA ---....(((((((((((((((.(((...))).))).......((....)).))))))))))))((((....))))((((((((((...)))))))))).... ( -41.40, z-score = -2.28, R) >droWil1.scaffold_180949 760515 100 - 6375548 ---CAGGCGAAUAGAUCUCUCACCAUUGUGUUUUGCGAUUGCUGUUGCUGUUGAUUCUUACACUCAGCCGCCACCGUGGAAAUGUCAGUAAUGUCCGCAUCUA ---..((((....((((.(.(((....)))....).))))((((..(.(((........)))).))))))))...(((((.((.......)).)))))..... ( -22.30, z-score = 0.34, R) >droMoj3.scaffold_6654 492880 102 - 2564135 UAAAAU-CGAGCAGGAGACAUACGAGCGUAUGCUGCGGCUGCUGUUGCUGUUGAUUUUUGCACUCGGCUGCUACGGUGGAAAUAUCUGUUAUAUCCGUAUCCA ....((-(((((((....)...((((.(((.....((((.((....)).)))).....))).))))..)))).))))(((.(((.....))).)))....... ( -28.10, z-score = -0.07, R) >droVir3.scaffold_13049 1759648 103 + 25233164 UAGGAUUCGAAGCUAUGUUGUACCAGCGUAUGCUGCGGCUGCUGUUGUUGCUGAUUUUUGCAUUCGGCGGCAACGGUGGAGAUGUCUGUUAUGUCCGUAUCCA ..((((.((.((((((((((...))))))).))).))((.((((((((((((((.........))))))))))))))(((.(((.....))).))))))))). ( -39.40, z-score = -2.69, R) >consensus ____AUUCAUUUUCAACCCUCACUACCGUGUGCUGGGACUGCUGCUGCUGCUGCGUCUUGCACUCGGCUGCCACGGUGGAGAUGUCCGUGAUGUCCGCAUCCA ...........................(..(((..((((.((.((((.(((........)))..)))).))(((((.........)))))..)))))))..). (-16.87 = -15.61 + -1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:56 2011