| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,817,905 – 20,818,020 |
| Length | 115 |
| Max. P | 0.948303 |
| Location | 20,817,905 – 20,818,020 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 66.30 |
| Shannon entropy | 0.63736 |
| G+C content | 0.44055 |
| Mean single sequence MFE | -22.38 |
| Consensus MFE | -13.01 |
| Energy contribution | -14.62 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20817905 115 + 24543557 UUUGGCACUGCCAUCGAA-CUUUGUUAAUAAUUGAGUAGCGGAAAGGUAAUAUAACCACCGCUCCAGGAACCUUGCUCCCCCUCCUCACCCCUCUGCUGCUCUGGUUUCGCAUAAA ....((...((((...((-(...))).......((((((((((..(((......))).((......))........................))))))))))))))...))..... ( -25.20, z-score = -0.59, R) >droSim1.chr3L 20173489 110 + 22553184 UUUGGCACUGCCAUCGAA-GUUUGUGAAUAAUUGAGUAGCGGAAAGGUAAUAUAACCAC-----CAGGAACCUUGCUACCCCUCCCCAAUCCUCUGCUGCUCUGGUUUCGCAUAAA ..((((...)))).....-...((((((.....((((((((((..(((......)))..-----..(((.............))).......))))))))))....)))))).... ( -28.92, z-score = -1.66, R) >droSec1.super_11 713755 110 + 2888827 UUUGGCACUGCCAUCGAA-GUUUGUGAAUAAUUGAGUAGCGGAAAGGUAAUAUAACCAC-----CAGGAACCUUUCUCCCCCUCCCCACUCCUCUGCUGCUCUGGUUUCGCAUAAA ..((((...)))).....-...((((((.....((((((((((..(((......)))..-----..(((.......))).............))))))))))....)))))).... ( -29.80, z-score = -2.18, R) >droEre2.scaffold_4784 20505232 106 + 25762168 UUUGGCUCUGCUAUCGAA-CUUUGUGAAUAAUUGAGUAAAGUGAAGGUAAUAUAACCACUGCUCCGGGAACCUUUCUCCCCCU---------ACCGCAGCUCUGUUUUCGCAUAAA ..((((...)))).....-...((((((.(((.((((...(((..(((......)))........((((.......))))...---------..))).)))).))))))))).... ( -20.50, z-score = -0.12, R) >droYak2.chr3L 4475774 92 - 24197627 UUUGGCACUGCCAUCGAAACUUUGUGAAUAAUCGAGUAACAUGAAGGUAAUAUAACC---------------UUUAACCCCCU---------UCCGUAGCUCUGGUUUCGCAUAAA ..((((...))))........(((((...((((((((.((..(((((..........---------------........)))---------)).)).)))).))))...))))). ( -18.67, z-score = -1.27, R) >droVir3.scaffold_13049 1729733 99 + 25233164 ----------CCUUCUAAAUUGUGUUAAU--UUUAUUGCAAGCCCUUCCAAGUAUCUUUGUCUCUGGCUGCCUAUCUUGGCUUCUCU--CUCUCUUCUGGUAU-UUUCCAUAUA-- ----------..........((((..((.--..((((...((((....((((....)))).....))))(((......)))......--.........)))).-))..))))..-- ( -11.20, z-score = -0.48, R) >consensus UUUGGCACUGCCAUCGAA_CUUUGUGAAUAAUUGAGUAGCGGAAAGGUAAUAUAACCAC_____CAGGAACCUUUCUCCCCCUCCCC___CCUCUGCUGCUCUGGUUUCGCAUAAA ..((((...)))).........((((((.....((((((((((..(((......))).........((...........))...........))))))))))....)))))).... (-13.01 = -14.62 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:54 2011