| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,794,327 – 20,794,417 |
| Length | 90 |
| Max. P | 0.738434 |
| Location | 20,794,327 – 20,794,417 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 64.17 |
| Shannon entropy | 0.55774 |
| G+C content | 0.45843 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -9.18 |
| Energy contribution | -8.22 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20794327 90 + 24543557 ACGCCAUUGGGAUUUAC--UGAUCCCAAUCCUGCUGCUCCCGCUC---------------------------CAGCUCCAGUUGCAAC-UCUAUAUCCUCCAACUCAACAAAGUUUAAUG ..((.(((((((((...--.))))))))).(((..(((.......---------------------------.)))..)))..))...-............................... ( -17.00, z-score = -2.37, R) >droYak2.chr3L 4441865 117 - 24197627 ACGCCAUUGGGAUUUAC--UGAUCCUACUCCUGCUGCUCCUGCUCAUGCUGCUCCCGCUCCGGUUUCCGCUCCAGCUCCUGUUACAAC-UCUGUAUCCUCCAGCUCAACAAAGUUCAAUG ....((((((((((...--.))))).......((((.....(((...((.(...(((...)))...).))...)))......((((..-..)))).....))))...........))))) ( -19.20, z-score = 0.28, R) >droSec1.super_11 693396 90 + 2888827 ACGCCAUUGGGGUUUAC--UGAUCCCACUCCUGCUGCUCCUGCUC---------------------------CAGCUCCAGUUGAAAC-UGUAUAUCCUCCAACUCAACAAAGUUUAAUG .......(((((((...--.)))))))...(((..((....))..---------------------------))).....(((((...-...............)))))........... ( -15.57, z-score = -0.42, R) >droSim1.chr3L 20152273 90 + 22553184 ACGCCAUUGGGAUUUAC--UGAUCCCACUCCUGCUGCUCCUGCUC---------------------------CAGCUCCAGUUGUAAC-UCUAUAUCCUCCAACUCAACAAAGUUUAAUG ....((((((((((...--.))))))((..(((..(((.......---------------------------.)))..)))..))...-...........................)))) ( -15.00, z-score = -1.44, R) >droVir3.scaffold_13049 22479498 100 + 25233164 AAAUGUUUGAGGAUUACAGCGUCCCUAAUUUAAUGACAUUUAUUAAA--------------------CAUUUCAGCUAGAGCCCAAGCAUCUGGAAACGAGAGACGAAAAAAAAACUAUU ...((((((.((.((..(((........((((((((...))))))))--------------------.......)))..))))))))))((((....).))).................. ( -15.86, z-score = -0.99, R) >consensus ACGCCAUUGGGAUUUAC__UGAUCCCACUCCUGCUGCUCCUGCUC___________________________CAGCUCCAGUUGAAAC_UCUAUAUCCUCCAACUCAACAAAGUUUAAUG ..((...(((((((......))))))).....))......................................((((....)))).................................... ( -9.18 = -8.22 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:53 2011