| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,782,553 – 20,782,665 |
| Length | 112 |
| Max. P | 0.940608 |
| Location | 20,782,553 – 20,782,665 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.74 |
| Shannon entropy | 0.37172 |
| G+C content | 0.62440 |
| Mean single sequence MFE | -28.94 |
| Consensus MFE | -22.86 |
| Energy contribution | -23.66 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.940608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20782553 112 - 24543557 CGCAGCGCAUGCGUGUAGCAUGUGCCCCUCAUCCUCCUCACCAUUCCCAUUCUCCUCCUCCGCCCGCAUCCCGCUGUUUGAUCGCAUCGCCUCUACAGGGCGUCAAAUUGCA .(((((((((((.....))))))))...................................(((((((.....))(((..((..((...)).)).))))))))......))). ( -28.50, z-score = -2.18, R) >droPer1.super_40 396273 84 - 810552 CGCAGCGCAUGCGUGUAGCAUGUGCCGC-----------ACCG--------------CUCCGUCGACUCCCCGCUGGCUGAUCGCCUUCUCCCU---GGGCGUCAAAUUGCA .((.((((((((.....)))))))).))-----------...(--------------(.(((.((......)).))).(((.(((((.......---))))))))....)). ( -31.60, z-score = -1.17, R) >dp4.chrXR_group8 8205079 84 - 9212921 CGCAGCGCAUGCGUGUAGCAUGUGCCGC-----------ACCG--------------CUCCGUCGACUCCCCGCUGGCUGAUCGCCUUCUCCCU---GGGCGUCAAAUUGCA .((.((((((((.....)))))))).))-----------...(--------------(.(((.((......)).))).(((.(((((.......---))))))))....)). ( -31.60, z-score = -1.17, R) >droSec1.super_11 681645 112 - 2888827 CGCAGCGCAUGCGUGUAGCAUGUGCCCCUCAUCCUCCUCACCAUUCCCAUCCUCCUCCUCCGUCCGCAUCCCGCUGUUUGAUCGCAUCGCCUCUCCAGGGCGUCAAAUUGCA ....((((((((.....))))))))...............................................((.((((((......(((((.....))))))))))).)). ( -26.50, z-score = -1.87, R) >droSim1.chr3L 20139016 112 - 22553184 CGCAGCGCAUGCGUGUAGCAUGUGCCCCUCAUCCUCCUCACCAUUCCCAUCCUCCUCCUCCGUCCGCAUCCCGCUGUUUGAUCGCAUCGCCUCUCCAGGGCGUCAAAUUGCA ....((((((((.....))))))))...............................................((.((((((......(((((.....))))))))))).)). ( -26.50, z-score = -1.87, R) >consensus CGCAGCGCAUGCGUGUAGCAUGUGCCCCUCAUCCUCCUCACCAUUCCCAU_CUCCUCCUCCGUCCGCAUCCCGCUGUUUGAUCGCAUCGCCUCU_CAGGGCGUCAAAUUGCA ....((((((((.....))))))))...............................................((.((((((.(((..............))))))))).)). (-22.86 = -23.66 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:52 2011