| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,902,085 – 5,902,182 |
| Length | 97 |
| Max. P | 0.901657 |
| Location | 5,902,085 – 5,902,182 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 66.24 |
| Shannon entropy | 0.64126 |
| G+C content | 0.48695 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -7.39 |
| Energy contribution | -11.28 |
| Covariance contribution | 3.89 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5902085 97 - 23011544 CCUCAAAGUUCAAUUGUUUGCGGCGAAGUCGCCAGUUUUUCCAU--GGGUCAGUCCCC-GUGGAAAAGCG-UUCCUCAAAAAUCCGACAAUUGCUCCGCGA- .......(..((((((((...((((....)))).((((((((((--(((......)))-)))))))))).-..............))))))))..).....- ( -34.70, z-score = -4.34, R) >droSim1.chr2L 5692813 97 - 22036055 ---CAAAGUUCAAUUGUUCGCGGCGAAGUCGCCAGUUUUUCCAUGAGGGUCAGUUCCCGGUGGAAAAGCG-UUCCUCAAAAAUCCGACAAUUGCUGCGCGA- ---....((.(((((((.((.((((....)))).((((((((((..(((......))).)))))))))).-.............)))))))))..))....- ( -34.30, z-score = -2.92, R) >droYak2.chr2L 9029252 97 + 22324452 CUUCAAAGUUCAAUUGUUGGCGGCGAAGUCGCCAGUUUUUCCAU--GGGUCAGUCCCC-GUGGAAAAGCG-UUCCUCAAAAAUCCGACAAUUGCUGCGCGA- .......((.((((((((((.((((....)))).((((((((((--(((......)))-)))))))))).-............))))))))))..))....- ( -41.60, z-score = -5.54, R) >droEre2.scaffold_4929 5986933 86 - 26641161 CUUCAAAGUUCAAUUGUUGGCCGC-----------UUUUUCCAU--GGGUCAGUCCCC-GCGGAAAAGCG-UUCCUCAAAAAUCCGACAAUUGCUGCGCGA- .......((.((((((((((.(((-----------((((.((.(--(((......)))-).)))))))))-............))))))))))..))....- ( -26.82, z-score = -2.29, R) >droAna3.scaffold_12916 11315651 77 - 16180835 CUUGAGAGUUCAAUUGUGGGCUGA----------------------GAAGCUGUUGC--AUGGCAAAGCGUUUUCACAAAAUACCGCCAAUUGCCUGGCGA- .(((..((((((....))))))((----------------------((((((.((((--...))))))).))))).))).....(((((......))))).- ( -20.60, z-score = 0.06, R) >droPer1.super_1 405753 101 - 10282868 CUUCAAAGUUCAAUUGUUGCCAAGACACUCGCCCAUUCCCCCACGACUCCACGUUGCC-AUAGAAAAACCCUUGCUUCUUUUUUCCUCAAAAGAAAAAAGAA ........(((...((((.....))))................((((.....))))..-...)))...........(((((((((.......))))))))). ( -10.70, z-score = -0.08, R) >consensus CUUCAAAGUUCAAUUGUUGGCGGCGAAGUCGCCAGUUUUUCCAU__GGGUCAGUCCCC_GUGGAAAAGCG_UUCCUCAAAAAUCCGACAAUUGCUGCGCGA_ ..........((((((((((...............(((((((((..(((.....)))..)))))))))...............))))))))))......... ( -7.39 = -11.28 + 3.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:06 2011