| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,765,693 – 20,765,784 |
| Length | 91 |
| Max. P | 0.952226 |
| Location | 20,765,693 – 20,765,784 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 98.53 |
| Shannon entropy | 0.02018 |
| G+C content | 0.41392 |
| Mean single sequence MFE | -21.03 |
| Consensus MFE | -21.03 |
| Energy contribution | -21.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20765693 91 + 24543557 GUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAAACCUAAUAAUAAUCGUAAUAAAAGUAA ((((......(((((....((((((.((((((....)).))))))))))..)))))..))))............................. ( -21.10, z-score = -1.82, R) >droSec1.super_11 664900 91 + 2888827 GUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAAACCUAAUAAUAAUCGUAAUAAAAGUAA ((((......(((((....((((((.((((((....)).))))))))))..)))))..))))............................. ( -21.10, z-score = -1.82, R) >droYak2.chr3L 4413436 91 - 24197627 GUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAUGACCGAGGCGCGCGAUGGCCAACAACAAACCUAAUAAUAAUCGUAAUAAAAAUAA ((((......(((((....((((((.((((((....)).))))))))))..)))))..))))............................. ( -20.90, z-score = -1.76, R) >consensus GUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAAACCUAAUAAUAAUCGUAAUAAAAGUAA ((((......(((((....((((((.((((((....)).))))))))))..)))))..))))............................. (-21.03 = -21.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:50 2011