| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,753,892 – 20,753,944 |
| Length | 52 |
| Max. P | 0.975096 |
| Location | 20,753,892 – 20,753,944 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 84.15 |
| Shannon entropy | 0.31307 |
| G+C content | 0.29121 |
| Mean single sequence MFE | -11.06 |
| Consensus MFE | -7.34 |
| Energy contribution | -7.19 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.975096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20753892 52 + 24543557 AAGUUGGAAUUGGUUUUUAAGGCUUAAGUUCUUAAGUC--CUCAAAAUCACAUU ..........(((((((...(((((((....)))))))--...))))))).... ( -10.00, z-score = -1.71, R) >droSim1.chr3L 20109620 52 + 22553184 UAGUUGGAAUUGGUUUUUAAGGCUUAAGUUCUUAAGUC--CUCAAAAUCACAUU ..........(((((((...(((((((....)))))))--...))))))).... ( -10.00, z-score = -1.75, R) >droSec1.super_11 653539 52 + 2888827 UAGUUGGAAUUGGUUUUUAAGGCUUAAGUUCUUAAGUC--CUCAAAAUCACAUU ..........(((((((...(((((((....)))))))--...))))))).... ( -10.00, z-score = -1.75, R) >droYak2.chr3L 4401732 52 - 24197627 CAGUUGGAAUUGGUUUUUAAGGCUUAAGUUCUUAAGUC--UUCAAAAUCACAUU ..........(((((((.(((((((((....)))))))--)).))))))).... ( -14.00, z-score = -4.16, R) >droEre2.scaffold_4784 20444534 52 + 25762168 UAGUUGGAAUUGGUUUUUAAGGCUUAAGUUCUUAAGUC--UUCAAAAUCACAUU ..........(((((((.(((((((((....)))))))--)).))))))).... ( -14.00, z-score = -4.22, R) >droAna3.scaffold_13337 11108765 52 + 23293914 AAGUUGAAAUUGGUUUUUAAGGCUUAAGUUCUUAAGUC--UUCAAAAUCAGAUU .........((((((((.(((((((((....)))))))--)).))))))))... ( -15.00, z-score = -4.34, R) >droWil1.scaffold_180703 3213561 52 - 3946847 AAGUCCGAUCUGAUUA--AAGAUUUAAAACCAUAAAUUAGUCUAAAAUUCGAUU ......((((.((((.--.(((((..............)))))..)))).)))) ( -4.44, z-score = -0.40, R) >consensus AAGUUGGAAUUGGUUUUUAAGGCUUAAGUUCUUAAGUC__UUCAAAAUCACAUU ..........(((((((...(((((((....))))))).....))))))).... ( -7.34 = -7.19 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:48 2011