| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,752,504 – 20,752,622 |
| Length | 118 |
| Max. P | 0.898666 |
| Location | 20,752,504 – 20,752,622 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 72.67 |
| Shannon entropy | 0.49382 |
| G+C content | 0.37676 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -14.60 |
| Energy contribution | -16.08 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20752504 118 + 24543557 AAAUCGAAACCAAGUAGCUGUAGCUUGUUACAAUGUCAAGUUGAUUUUUCCGAUGAUUCUUCAAGUAGUUCCUUAUUGAUGACCAUCAGACGGGAAUAGCUUAGCAUCAAGGAAAUCC .((((((.((...(((((........)))))...))....))))))(((((..((((.((..((((.((((((..(((((....)))))..)))))).)))))).)))).)))))... ( -27.70, z-score = -1.56, R) >droSim1.chr3L 20108222 118 + 22553184 AAAUCGAAACCAAGUAGCUAUAGCUUGUUACAAUGUCAAGUUGAUUUUUCCGAUGAUUCUUCAAGUAGUUCCUUAUUGAUGACCAUCAGUCGGGAAUAGCUGGGCAUCAAGGAAAUCC .((((((.((...(((((........)))))...))....))))))(((((..((((.((...(((.((((((.((((((....)))))).)))))).))).)).)))).)))))... ( -30.70, z-score = -2.05, R) >droSec1.super_11 652142 118 + 2888827 AAAUGGAAACCAAGUAGCUGUAGCUUGUUACAAUGUCAAAUUGAUUUUUCCGAUGAUUCUUCAAGUAGUUCCUUAUUGAUGACCAUCAGUCGGGAAUAGCUGGGCAUCGAGGAAAUCC ....(....)...(((((........)))))...........((((((..(((((.(((....(((.((((((.((((((....)))))).)))))).)))))))))))..)))))). ( -33.00, z-score = -2.13, R) >droEre2.scaffold_4784 20443066 116 + 25762168 AAAUCGA--CCAAGUAGCUCGAGCAUGCUACAAUUUCAAGUUCUUCUUUCCGAUUAUUCUUCAAGUAGUUCCUUAUUGAUGACCAUCAGUCGGGAAUAGUUUGCCAUCAAGGAAAUCC .......--....(((((........)))))...............(((((((....))..((((..((((((.((((((....)))))).))))))..)))).......)))))... ( -26.10, z-score = -1.86, R) >droWil1.scaffold_180949 3898948 107 - 6375548 ----------CAUUCAAUACUAAGACCAU-CAAAGUUUGUAUACCCUUGCAACUUUUUUGGUAACUAUUUCCUUAGCUAUAGCCAUCAAAGUGGAAAAACGUUUUAUCUAAAAAGUCU ----------......((((((((((((.-.((((((.(((......)))))))))..)))).........))))).)))..((((....))))........................ ( -15.50, z-score = -0.66, R) >consensus AAAUCGAAACCAAGUAGCUCUAGCUUGUUACAAUGUCAAGUUGAUUUUUCCGAUGAUUCUUCAAGUAGUUCCUUAUUGAUGACCAUCAGUCGGGAAUAGCUUGGCAUCAAGGAAAUCC .............(((((........)))))...............(((((((.......)).(((.((((((.((((((....)))))).)))))).))).........)))))... (-14.60 = -16.08 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:47 2011