| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,750,426 – 20,750,525 |
| Length | 99 |
| Max. P | 0.851003 |
| Location | 20,750,426 – 20,750,525 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 91.56 |
| Shannon entropy | 0.15177 |
| G+C content | 0.29413 |
| Mean single sequence MFE | -17.56 |
| Consensus MFE | -15.90 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.851003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20750426 99 - 24543557 AGUCUGUAUUUUUUUCAGUGCAUUUGAAAGCCGUGGAAUAUUUUGCAUACCCACAUAUAGCUAAAAAAUAUUCUACAAUUCUUUUGUAAAAGUCAACAA .((.((.(((((((((((.....))))))...(((((((((((((((((......))).))...))))))))))))............))))))))).. ( -15.80, z-score = -0.96, R) >droSim1.chr3L 20106167 95 - 22553184 ----AAUUUUUUUUUCGGUGCAUUUGAAUGCCGUGGAAUAUUUUGCAUACCCACAUAUAGCUAAAAAAUAUUCUACAAUUCUUUUGUAAAAGUCAACAA ----..............((((...((((...(((((((((((((((((......))).))...)))))))))))).))))...))))........... ( -16.80, z-score = -1.52, R) >droSec1.super_11 650105 95 - 2888827 ----AAUUUUUUUUUCGGUGCAUUUGAAUGCCGUGGAAUAUUUUGCAUACCCACAUAUAGCUAAAAAAUAUUCUACAAUUCUUUUGUAAAAGUCAACAA ----..............((((...((((...(((((((((((((((((......))).))...)))))))))))).))))...))))........... ( -16.80, z-score = -1.52, R) >droYak2.chr3L 4398793 97 + 24197627 --CGUGUAUUUUUUUCGGUGCAUUUGAAUGCCGUGGAAUAUUUUGCAUACUCACAUAUAGCUAAAAAAUAUUCUACCAUUCUUUUGUAAAAGUCAACAA --................((((...(((((..(((((((((((((((((......))).))...)))))))))))))))))...))))........... ( -18.40, z-score = -1.58, R) >droEre2.scaffold_4784 20440914 90 - 25762168 ---------UGUUUUAGGUGCAUUUGAAUGCCGUGGAAUAUUUUGCAUACUCACAUAUAGCUAAAAAAUAUUCUACCAUUCUUUUGUAAAAGUCAACAA ---------((((.....((((...(((((..(((((((((((((((((......))).))...)))))))))))))))))...))))......)))). ( -20.00, z-score = -2.48, R) >consensus ____AAUAUUUUUUUCGGUGCAUUUGAAUGCCGUGGAAUAUUUUGCAUACCCACAUAUAGCUAAAAAAUAUUCUACAAUUCUUUUGUAAAAGUCAACAA ..................((((...((((...(((((((((((((((((......))).))...)))))))))))).))))...))))........... (-15.90 = -16.10 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:46 2011