| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,738,474 – 20,738,570 |
| Length | 96 |
| Max. P | 0.902565 |
| Location | 20,738,474 – 20,738,570 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 77.11 |
| Shannon entropy | 0.46292 |
| G+C content | 0.39784 |
| Mean single sequence MFE | -14.88 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.86 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20738474 96 - 24543557 AGUGGCAUUUUUAUUAGGUGUAUGCCUCCGUAAAUCACUAUGCCACCCACUCAACUACAUACUUACUCCAAU-AAAUGCCCAAACAAAUACAUGCUU .(((((((.(((((.((((....))))..))))).....)))))))..........................-........................ ( -15.00, z-score = -1.18, R) >droPer1.super_40 358912 93 - 810552 AGUGGCAUUUUUAUUAGGUGUAUGCCUCUGUAAAUCACUACGCCACCCACUCAACUACUCCCACCGCUCCCCGCACUAUACAAAUACGUGUAU---- .(((((.........((((....))))..(((......))))))))...................((.....))..(((((......))))).---- ( -15.90, z-score = -1.04, R) >dp4.chrXR_group8 8167850 93 - 9212921 AGUGGCAUUUUUAUUAGGUGUAUGCCUCUGUAAAUCACUACGCCACCCACUCAACUACUCCCACCGCUCCCCGCACUAUACAAAUACGUGUAU---- .(((((.........((((....))))..(((......))))))))...................((.....))..(((((......))))).---- ( -15.90, z-score = -1.04, R) >droAna3.scaffold_13337 11093017 83 - 23293914 AGCGGCAUUUUUAUUAGGUGUAUGGCUCUGUAAAUCACUAUGCCACCCACUCGACUCUAUAC---CCCAAACAAAAUGCCAAAAAA----------- ...((((((((.....((((((((((...((.....))...))))............)))))---)......))))))))......----------- ( -19.00, z-score = -2.66, R) >droEre2.scaffold_4784 20431027 93 - 25762168 AGUGGCAUUUUUAUUAGGUGUAUGCCUCCGUAAAUCACUAUGCCACCCACCCAAC----UACUUACUCAAAUAAAAUGCCCAAACAAAUAUAUUCAU .(((((((.(((((.((((....))))..))))).....))))))).........----...................................... ( -15.00, z-score = -1.87, R) >droYak2.chr3L 4388618 92 + 24197627 AGUGCCAUUUUUAUUAGGUGUAUACCUUCGUAAAUCACUAUGCCUCCAACGCAA----AUACUUACACAAAU-AAAUGCCCAAACAAAUAUAGUCAU .(.((....((((((..((((((((....)))........(((.......))).----.....))))).)))-))).)).)................ ( -8.20, z-score = 0.48, R) >droSec1.super_11 626135 96 - 2888827 AGUGGCAUUUUUAUUAGGUGUAUGCCUCCGUAAAUCACUAUGCCACCCACUCAACUACAUACUUACUCCAAU-AAAUGCCCAAACAAAUACAUGCUU .(((((((.(((((.((((....))))..))))).....)))))))..........................-........................ ( -15.00, z-score = -1.18, R) >droSim1.chr3L 20094760 96 - 22553184 AGUGGCAUUUUUAUUAGGUGUAUGCCUCCGUAAAUCACUAUGCCACCCACUCAAUUACAUACUUACUCCAAU-AAAUGCCCAAACAAAUACAUGCUU .(((((((.(((((.((((....))))..))))).....)))))))..........................-........................ ( -15.00, z-score = -1.12, R) >consensus AGUGGCAUUUUUAUUAGGUGUAUGCCUCCGUAAAUCACUAUGCCACCCACUCAACUACAUACUUACUCCAAU_AAAUGCCCAAACAAAUAUAU_C_U .(((((((.(((((.((((....))))..))))).....)))))))................................................... (-11.22 = -11.86 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:42 2011