| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,723,584 – 20,723,649 |
| Length | 65 |
| Max. P | 0.984297 |
| Location | 20,723,584 – 20,723,649 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 94.87 |
| Shannon entropy | 0.07064 |
| G+C content | 0.57732 |
| Mean single sequence MFE | -14.95 |
| Consensus MFE | -13.12 |
| Energy contribution | -12.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20723584 65 + 24543557 AACGCUCCAUUCUCUCUCCCAAAACCGCGAACGCUCCCCCCUUAAGAGAGAGUGCCCAAGCGAUA ..((((.((((((((((.........((....))..........))))))))))....))))... ( -18.51, z-score = -4.69, R) >droSec1.super_11 611559 64 + 2888827 AACGCUCCAUUCUCUCCCCCAAAACCGCGAACGCUCCCCC-UUAAGAGAGCGUGCCCAAGCGAUU ..((((.(((.(((((..........((....))......-....))))).)))....))))... ( -13.45, z-score = -2.74, R) >droSim1.chr3L 20079497 65 + 22553184 AACGCUCCAUUCUCUCCCCCAAAACCGCGAACGCUCCCCCCUUAAGAGAGCGUGCCCAGGCGAUU ..((((.(((.(((((..........((....))...........))))).)))....))))... ( -12.90, z-score = -1.37, R) >consensus AACGCUCCAUUCUCUCCCCCAAAACCGCGAACGCUCCCCCCUUAAGAGAGCGUGCCCAAGCGAUU ..((((.(((.(((((..........((....))...........))))).)))....))))... (-13.12 = -12.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:41 2011