| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,706,635 – 20,706,696 |
| Length | 61 |
| Max. P | 0.892383 |
| Location | 20,706,635 – 20,706,696 |
|---|---|
| Length | 61 |
| Sequences | 12 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 88.25 |
| Shannon entropy | 0.26515 |
| G+C content | 0.37568 |
| Mean single sequence MFE | -13.96 |
| Consensus MFE | -11.40 |
| Energy contribution | -11.32 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20706635 61 + 24543557 UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCUGUUCGAGUUUUAUUAGAUUUUGUAG .(((((((((((((....)))).)))))((((....))))))))................. ( -13.40, z-score = -1.94, R) >droPer1.super_40 325904 61 + 810552 UGCUCGGUGAGAUUUUGUAGUCUCCAUCGAAUUCCAGUUCGAGUUUGAUGAGAUUUUGCAA (((..(((((((((....))))))((((((((((......))))))))))..)))..))). ( -17.90, z-score = -2.43, R) >dp4.chrXR_group8 8134141 61 + 9212921 UGCUCGGUGAGAUUUUGUAGUCUCCAUCGAAUUCCAGUUCGAGUUUGAUGAGAUUUUGCAA (((..(((((((((....))))))((((((((((......))))))))))..)))..))). ( -17.90, z-score = -2.43, R) >droAna3.scaffold_13337 11058317 61 + 23293914 UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCAGUUCGAGCUUAAUUAGGUUUUGCAA .(((((((((((((....)))).)))))((((....))))))))................. ( -15.50, z-score = -1.97, R) >droEre2.scaffold_4784 20398929 61 + 25762168 UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCUGUUCGAGUUUUAUUAGAUUUUGCAA .(((((((((((((....)))).)))))((((....))))))))................. ( -13.40, z-score = -1.62, R) >droYak2.chr3L 4355091 61 - 24197627 UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCUGUUCGAGUUUUAUUAGGUUUUGUAA .(((((((((((((....)))).)))))((((....))))))))................. ( -13.40, z-score = -2.16, R) >droSim1.chr3L 20061747 61 + 22553184 UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCUGUUCGAGUUUUAUUAGAUUUUGUAG .(((((((((((((....)))).)))))((((....))))))))................. ( -13.40, z-score = -1.94, R) >droSec1.super_11 595476 61 + 2888827 UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCUGUUCGAGUUUUAUUAGAUUUUGUAG .(((((((((((((....)))).)))))((((....))))))))................. ( -13.40, z-score = -1.94, R) >droWil1.scaffold_180949 2427510 61 + 6375548 UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCAAUUCGAGUUUAAUAAGAUUUUGCAA ......(..(((((((((........((((((....)))))).....)))))))))..).. ( -13.12, z-score = -1.60, R) >droMoj3.scaffold_6680 12611443 61 + 24764193 UGCUCGGUGAGAUUUUAUAGUCUUCAUCGAAUUCCUGUUCGAUUUUAAUUAGAUUUUGCAA ...(((((((((((....)))).))))))).....(((..(((((.....)))))..))). ( -13.10, z-score = -1.90, R) >droVir3.scaffold_13049 6604951 61 - 25233164 UGCUCGGUGAGAUUUUAUAGUCUUCAUCGAAUUCCAAUUCGAGUUUAAUUAGAUUUUGCAA ((((((((((((((....)))).)))))))..........((((((....)))))).))). ( -12.90, z-score = -1.81, R) >anoGam1.chr3L 26201696 61 - 41284009 UUCUCGGUGGUGCCGUAUAGUCCUCGUCGAAUUCCAGCUCCGUUUUCACGAGAUUCUCUAU ....(((.....))).......(((((.(((..(.......)..))))))))......... ( -10.10, z-score = 0.39, R) >consensus UGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCAGUUCGAGUUUUAUUAGAUUUUGCAA .(((((((((((((....))))).))))((((....))))))))................. (-11.40 = -11.32 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:36 2011