| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,700,353 – 20,700,431 |
| Length | 78 |
| Max. P | 0.551457 |
| Location | 20,700,353 – 20,700,431 |
|---|---|
| Length | 78 |
| Sequences | 12 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 79.04 |
| Shannon entropy | 0.41123 |
| G+C content | 0.37546 |
| Mean single sequence MFE | -14.45 |
| Consensus MFE | -9.59 |
| Energy contribution | -9.59 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20700353 78 - 24543557 ------------UCAACUAUUUCUUUCAGUG-CACCAGCUCCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA ------------................(((-(.........((((-(..(((.........)))..)))))........))))........ ( -11.43, z-score = -0.57, R) >droSim1.chr3L 20056035 76 - 22553184 --------------AACUAUUUCUUUCAGUG-CACCUGCUCCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA --------------..............(((-(.........((((-(..(((.........)))..)))))........))))........ ( -11.43, z-score = -0.25, R) >droSec1.super_11 589648 76 - 2888827 --------------AACUAUUUUUUUCAGUG-CACCUGCUCCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA --------------..............(((-(.........((((-(..(((.........)))..)))))........))))........ ( -11.43, z-score = -0.12, R) >droYak2.chr3L 4349079 78 + 24197627 ------------UGAACUAUUUCUUUCAGUG-CACCUGCUCCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA ------------((((........))))(((-(.........((((-(..(((.........)))..)))))........))))........ ( -11.73, z-score = -0.02, R) >droEre2.scaffold_4784 20393244 68 - 25762168 ----------------------CUUUCAGUG-CAGCUGCACCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA ----------------------......(((-(....))))..((.-((((((.((((..........)))))))))).))........... ( -14.40, z-score = -0.88, R) >droAna3.scaffold_13337 11051783 77 - 23293914 --------------UACAACUUCUCUCAGUGUUUCAUACAUCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGUA --------------(((...........((((.....))))..((.-((((((.((((..........)))))))))).))........))) ( -10.70, z-score = -1.23, R) >dp4.chrXR_group8 8125155 77 - 9212921 --------------UACUUUUUCUGCCAGUGGCCGACGCACCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGUA --------------(((.((((.((((.((((........))))..-((((((.((((..........)))))))))).)))).)))).))) ( -19.90, z-score = -2.22, R) >droPer1.super_40 316382 77 - 810552 --------------UACUUUUUCUGCCAGUGGCCGACGCACCACCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGUA --------------(((.((((.((((.((((........))))..-((((((.((((..........)))))))))).)))).)))).))) ( -19.90, z-score = -2.22, R) >droWil1.scaffold_180949 2417191 70 - 6375548 -------------------UUUUCCUAAGUG---UACUCUCUGUCCAUAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACGAAAUGUG -------------------............---(((..((((.((.((((((.((((..........)))))))))).)))).))...))) ( -11.60, z-score = -1.00, R) >droVir3.scaffold_13049 6596898 68 + 25233164 --------------------UUCUUUCAGUG---UAUUGGCUCCCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA --------------------........(((---(.((((((....-((((((.((((..........)))))))))).))).))).)))). ( -16.00, z-score = -1.81, R) >droMoj3.scaffold_6680 12601281 70 - 24764193 ------------------AUUUCUUUCAGUG---UAUUGUCGUCCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA ------------------..........(((---(.((((.(.((.-((((((.((((..........)))))))))).))))))).)))). ( -18.00, z-score = -3.75, R) >droGri2.scaffold_15110 5449937 88 + 24565398 UCAAGUUGUUGUGCAAAACUUUGUUUUUGUG---UAUUGGCUCCCC-UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA ..(((((.........)))))......((((---(.((((((....-((((((.((((..........)))))))))).))).))).))))) ( -16.90, z-score = 0.10, R) >consensus ______________AACUAUUUCUUUCAGUG_CACAUGCUCCACCC_UAAUUAUGCCCAAUUUAAAAAGGGUUAAUUAAGGCACAAAACGCA ............................(((.............((.((((((.((((..........)))))))))).)))))........ ( -9.59 = -9.59 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:35 2011