| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,700,173 – 20,700,269 |
| Length | 96 |
| Max. P | 0.894315 |
| Location | 20,700,173 – 20,700,269 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.41 |
| Shannon entropy | 0.50776 |
| G+C content | 0.39790 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -7.65 |
| Energy contribution | -8.33 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20700173 96 - 24543557 GACCGAUGCUGUAGAAUAUGUAUGUAUAUAUGUACAUAUAAACACACUCGGCGAUCAGAGCGACCAAUAAUUACAUACAGCAUUUGUCAUAACACC (((.(((((((((.(((.(((((((((....)))))))))....(.(((........))).).......)))...))))))))).)))........ ( -27.20, z-score = -3.93, R) >droSim1.chr3L 20055865 86 - 22553184 GACCGAUGCUGUAGAAUAUAUAUAUAUAUAU----------ACAAACUCGACGAUCAGAGCGACCAAUAAUUACAUACAGCAUUUGUCAUAACACC (((.((((((((((.((((((....))))))----------.)...(((........)))...............))))))))).)))........ ( -20.40, z-score = -4.83, R) >droYak2.chr3L 4348915 80 + 24197627 GAUCGGUGCUAUGGGAUAUAUAUAC----------------ACACACUUGGCGAUCAGAGCGACCAAUAAUUACAUACAGCAUUUGUCAUAACACC (((..(((((((((..((....)).----------------.)....((((((.......)).))))......)))..)))))..)))........ ( -12.10, z-score = 0.06, R) >droEre2.scaffold_4784 20393077 83 - 25762168 GACCGAUGCUGUGGGAUAUAUACAAGCAU------------ACACACUCGGCGAUCGCAGCGACC-AUAAUUACAUACAGCAUUUGUCAUAACACC (((.(((((((((.(((.(((....((..------------.(......)((....)).))....-))))))...))))))))).)))........ ( -18.70, z-score = -1.69, R) >droWil1.scaffold_180949 2417019 86 - 6375548 -CCCAAUG--ACAGUUUUUGUCCUUGCGU-------CGUGAGUCCAGUUCUUCAUCUUCCAAUACAAUAAUUACAUACAGCAUUUGUCAUAACACC -....(((--((((...((((...((.(.-------(....).)))((...............))...........))))...)))))))...... ( -8.76, z-score = 0.13, R) >consensus GACCGAUGCUGUAGAAUAUAUAUAUACAU____________ACACACUCGGCGAUCAGAGCGACCAAUAAUUACAUACAGCAUUUGUCAUAACACC (((.(((((((((..............................................................))))))))).)))........ ( -7.65 = -8.33 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:34 2011