| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,687,202 – 20,687,317 |
| Length | 115 |
| Max. P | 0.994139 |
| Location | 20,687,202 – 20,687,317 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 142 |
| Reading direction | reverse |
| Mean pairwise identity | 59.27 |
| Shannon entropy | 0.69587 |
| G+C content | 0.41346 |
| Mean single sequence MFE | -35.02 |
| Consensus MFE | -15.34 |
| Energy contribution | -17.62 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.67 |
| SVM RNA-class probability | 0.994139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20687202 115 - 24543557 ---------CGUAACCCCCCAAGGGGUUAGU----------UUU---AGAAAUGUUCGAGGAACAGGCCAUCGGCGAUUCAAAUCGUUGU----ACCAUUGGCCUUAAG-UUCUUGAAUGAAUUUCUGCUCUUCUUUUGCUA ---------..(((((((....)))))))..----------..(---(((((((((((((((..((((((.(((((((....))))))).----.....))))))....-)))))))))..))))))).............. ( -39.20, z-score = -3.75, R) >droWil1.scaffold_180949 2399474 105 - 6375548 --------------AGUCAUCAAGAAUCAUG----------UU-----CAUAAUUUCAUUCAUCACACUGUCCAUGACUAUGAUGAGGAU-UCUAGUUGAGGCUUUAAAUUUC---AACCGAUUGUUAAUGUCAUUCU---- --------------........(((((.(((----------((-----.((((((((.(((((((....(((...)))..))))))))).-....(((((((.......))))---))).)))))).))))).)))))---- ( -18.80, z-score = 0.26, R) >droYak2.chr3L 4335851 136 + 24197627 ---GGUAUUUCGAAGGCCCCAAGGGGUUAUGGAAUUACUUCUUGUAAAUACAUAUUCAACGAACAGGCAAUCGGCGAUCGAAAUCGCUGUGUAUAAUUUUUGCCCUAAGUUUCUUGAAUGAAUUUGUGCACUUCCUUUA--- ---((((.(((.(..((((....))))..).))).))))...((((......(((((((.((((.(((((.(((((((....)))))))..........)))))....)))).)))))))......)))).........--- ( -36.50, z-score = -2.04, R) >droSec1.super_11 576586 128 - 2888827 UGAAUAGAACUAGAGACCCCAAGGGGUUAGG----------UUUCAGAUACAUGUUCGAGGAACAGGCCAUCGGCGAUUCAAAUCGUUGUCUAAAACAUUGGCCUUAAG-UUCUUGAAUGAAUUUCUGCUCUGCCCCUA--- .....................((((((.(((----------...((((.....(((((((((..((((((.(((((((....)))))))..........))))))....-))))))))).....)))).))))))))).--- ( -39.10, z-score = -2.05, R) >droSim1.chr3L 20041246 125 - 22553184 ---CGUAUUCCGGAGACCCCAAGGGGUUAGG----------UUUCAGAUACAUGUUCGAGGAACAGGCCAUCGGCGAUUCAAAUCGUUGUCUAAAACAUUGGCCUUAAG-UUCCUGAAUGAAUUUCUGCUCUGCCCCUA--- ---........((.....)).((((((.(((----------...((((.....((((.((((((((((((.(((((((....)))))))..........))))))...)-))))))))).....)))).))))))))).--- ( -41.50, z-score = -2.50, R) >consensus _________CCGAAGACCCCAAGGGGUUAGG__________UUU_A_AUACAUGUUCGAGGAACAGGCCAUCGGCGAUUCAAAUCGUUGU_UAAAACAUUGGCCUUAAG_UUCUUGAAUGAAUUUCUGCUCUGCCUCUA___ ..............(((((....))))).........................(((((((((..((((((.(((((((....)))))))..........)))))).....)))))))))....................... (-15.34 = -17.62 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:33 2011