| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,681,647 – 20,681,745 |
| Length | 98 |
| Max. P | 0.974555 |
| Location | 20,681,647 – 20,681,745 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 85.59 |
| Shannon entropy | 0.25829 |
| G+C content | 0.43480 |
| Mean single sequence MFE | -24.08 |
| Consensus MFE | -17.81 |
| Energy contribution | -18.92 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974555 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 20681647 98 - 24543557 ------------UCAUUGUGGUGCCUUUGG-UUUGGUUGUGCU-UUUCCAUUGCCAUUCCCUUCGCGCGCCGUGUUCUCGUUUAAACGUUUAUUUAACUUAAACGAACUUUG ------------.((..((((((((...((-..((((.(((..-....))).))))..))....).)))))......((((((((..(((.....)))))))))))))..)) ( -24.00, z-score = -2.66, R) >droSim1.chr3L 20035404 98 - 22553184 ------------UCAUUCUGGUGCCUUUGG-UUUGGUUGUGCU-UCUCCAUUGCCAUUCCCUUCGCGCGCCGUGUUCUCGUUUAAACGUUUAUUUAACUUAAACGAACUUUG ------------.......((((((...((-..((((.(((..-....))).))))..))....).)))))......((((((((..(((.....)))))))))))...... ( -23.80, z-score = -3.16, R) >droSec1.super_11 571035 98 - 2888827 ------------UCAUUCUGGUGCCUUUGG-UUUGGUUGUGUU-UCCCCAUUGCCAUUCCCUUCGCGCGCCGUGUUCUCGUUUAAACGUUUAUUUAACUUAAACGAACUUUG ------------.......((((((...((-..((((.(((..-....))).))))..))....).)))))......((((((((..(((.....)))))))))))...... ( -24.10, z-score = -3.28, R) >droYak2.chr3L 4330232 99 + 24197627 ------------UCAUUCUGGAGCCUUUGGUUUUGGCUGUGCU-UUUCCAUUGCCAUUCCCUUCGCGCGCCGUGUUCUCGUUUAAACGUUUAUUUAACUUAAACGAACUUUG ------------.......((.(((...((...((((.(((..-....))).))))...))...).)).))......((((((((..(((.....)))))))))))...... ( -20.90, z-score = -1.49, R) >droEre2.scaffold_4784 20374426 99 - 25762168 ------------UUAUUCUGGUGCCUUUGGUUUUGGUUGUGAU-UUUCCAUAGCCAUUCCCUUCGCGCGCCGUGUUCUCGUUUAAACGUUUAUUUAACUUAAACGAACUUUG ------------.......((((((...((...((((((((..-....))))))))...))...).)))))......((((((((..(((.....)))))))))))...... ( -27.30, z-score = -4.24, R) >droAna3.scaffold_13337 11033942 112 - 23293914 UCAGUUUGGCUCUUUGCUUUUAGCCAGUAACACUGCCAGUGCCAGAGCCAGUGCCAUUCCCUUCGCGCGCCGUGUUCUCGUUUAAACGUUUAUUUAACUUAAACGAACUUUG ......(((((((..((.....((.((.....))))....)).)))))))((((.(......).)))).........((((((((..(((.....)))))))))))...... ( -24.40, z-score = -0.76, R) >consensus ____________UCAUUCUGGUGCCUUUGG_UUUGGUUGUGCU_UUUCCAUUGCCAUUCCCUUCGCGCGCCGUGUUCUCGUUUAAACGUUUAUUUAACUUAAACGAACUUUG ..................(((((((...((...((((.(((.......))).))))...))...).)))))).....((((((((..(((.....)))))))))))...... (-17.81 = -18.92 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:32 2011