| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,679,570 – 20,679,664 |
| Length | 94 |
| Max. P | 0.515625 |
| Location | 20,679,570 – 20,679,664 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.25 |
| Shannon entropy | 0.44723 |
| G+C content | 0.41692 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -12.43 |
| Energy contribution | -12.59 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20679570 94 + 24543557 --GUAUGUGGCCCACCG-AAAAAAAUAA---AUAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUAGCA-- --...((((..(((..(-(.........---.......))(((((((....((((........))))..)))))))..)))..)))).............-- ( -20.09, z-score = -1.12, R) >droPer1.super_40 295572 95 + 810552 GUAUCGUUGGGCCUUUUUCGAGAGUA------UAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUCUGCA- ..(((((((..((.....(....)..------........(((((((....((((........))))..)))))))...))..)).)))))..........- ( -20.20, z-score = -0.08, R) >dp4.chrXR_group8 8104308 96 + 9212921 GUAUCGUUGGGCCUUUUUCGAGAGUA------UAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUCUGCAA ..(((((((..((.....(....)..------........(((((((....((((........))))..)))))))...))..)).)))))........... ( -20.20, z-score = -0.10, R) >droAna3.scaffold_13337 11031918 93 + 23293914 --GCAUAUGGCCCACCG-AAAAAAAUAA---AUAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUCU-AGCA-- --((...(((....)))-..........---.........(((((((....((((........))))..)))))))...(((((....)))))..-.)).-- ( -19.50, z-score = -1.60, R) >droEre2.scaffold_4784 20372316 94 + 25762168 --GUAUGUGGCCCACCG-AAAAAAAUAA---AUAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUAGCA-- --...((((..(((..(-(.........---.......))(((((((....((((........))))..)))))))..)))..)))).............-- ( -20.09, z-score = -1.12, R) >droYak2.chr3L 4328071 94 - 24197627 --GUAUGUGGCCCACCG-AAAAAAAUAA---AUAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUAGCA-- --...((((..(((..(-(.........---.......))(((((((....((((........))))..)))))))..)))..)))).............-- ( -20.09, z-score = -1.12, R) >droSec1.super_11 568913 94 + 2888827 --GUAUGUGGCCCACCG-AAAAAAAUAA---AUAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUAGCA-- --...((((..(((..(-(.........---.......))(((((((....((((........))))..)))))))..)))..)))).............-- ( -20.09, z-score = -1.12, R) >droSim1.chr3L 20033303 94 + 22553184 --GUAUGUGGCCCACCG-AAAAAAAUAA---AUAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUAGCA-- --...((((..(((..(-(.........---.......))(((((((....((((........))))..)))))))..)))..)))).............-- ( -20.09, z-score = -1.12, R) >droVir3.scaffold_13049 6576345 93 - 25233164 --GUAUUUGGCGAAAAG-AAGGCGAAGAAACAAAAAUAUCACUUAACACAGGCGCAAACGAUCGGGCACGUUUGGUAAUGGAUCACACGAUCUGCA------ --((.((((.(......-..).))))...))....................((.((((((........)))))).....(((((....))))))).------ ( -15.20, z-score = 0.52, R) >droMoj3.scaffold_6680 12579384 88 + 24764193 --GUAUUCAUUGGAAAG-AAGUACAA-----AAAAAUAUCACUUAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUGUG------ --((((((........)-.)))))..-----...............(((((((((........)))).(((.((((.....)))).)))..)))))------ ( -18.80, z-score = -1.32, R) >droGri2.scaffold_15110 5428965 96 - 24565398 GUAUUUUUUACAAAUAGCAAAAAAAAAAAGGAAGAAUAUCACUUAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUGCA------ (((.....))).....(((.................(((.(((.(((....((((........))))..))).))).)))((((....))))))).------ ( -16.80, z-score = -1.02, R) >droWil1.scaffold_180949 2391181 99 + 6375548 GUAUACCAAACACCAAGGAAAGAAAAAAUAAAUAAAUAUCACAAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUCUGCA--- (((((((((((.(....).................................((((........))))..))))))))..(((((....)))))..))).--- ( -21.10, z-score = -2.94, R) >consensus __GUAUGUGGCCCACCG_AAAAAAAAAA___AUAAAUAUCACUAAACACAGGCGCAAACGAUCGCGCACGUUUGGUAAUGGAUCACACGAUCUUUUAGCA__ ........................................(((.(((....((((........))))..))).)))...(((((....)))))......... (-12.43 = -12.59 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:31 2011