| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,669,047 – 20,669,148 |
| Length | 101 |
| Max. P | 0.742965 |
| Location | 20,669,047 – 20,669,148 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 61.30 |
| Shannon entropy | 0.65537 |
| G+C content | 0.37093 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -7.12 |
| Energy contribution | -7.12 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20669047 101 + 24543557 UCAGUUGAGCUAGGUUGGGUAUGCCCAAUGUUAUG--GAAGAUCAUAGUCUGAU-CAUAGCCUGA-------ACUUAAUAAUUUAA-CAGCUUAUUUAAAAGAUGUAAGCCU ...((((((.(((((((((....))))))((((((--(.((((....))))..)-))))))))).-------.)))))).......-..((((((.........)))))).. ( -24.80, z-score = -1.48, R) >droSim1.chr3L 20022809 109 + 22553184 UCAGUUGAGCUAGGUUGGGUAUGCCCAAUGUUAUG--GCAGAUCAUAGUCUGAU-CAUAGCUUAAUAACUUAACUUAAUCAUUUAAGCAGCUUAUUUAAAAUAAGUAAGCGU ..(((((((....((((((....))))))((((((--((((((....))))).)-)))))).......)))))))..............(((((((((...))))))))).. ( -33.20, z-score = -3.86, R) >droYak2.chr3L 4317466 82 - 24197627 UCAGUUGAGCUAGGUUGGGUAUGCCCAAUGUUAUG--GAAGAUCAUAGUC-----CAUGAGCUAU--------UUAAAAUACCCAAGCACACAACAC--------------- ...((((.(...(.((((((((....(((((((((--((.........))-----)))))..)))--------)....)))))))).).).))))..--------------- ( -20.90, z-score = -1.71, R) >droEre2.scaffold_4784 20361860 92 + 25762168 UUGGUUGAGCUAGGUUGGGUAUGCCCAAUGUUAUG--GAAGGUCAAAGUC-----CAUGAACUCAUA--UUAGCAUAAUUAUUUAAGCAGCCUAUUUAAAA----------- ..(((((.(((((((((((....)))))).(((((--((.........))-----))))).......--))))).(((....)))..))))).........----------- ( -23.80, z-score = -1.52, R) >droAna3.scaffold_13337 11021481 96 + 23293914 UAAGUUGAGAUAGGUUGGGUCUUGGCCAAGUUAUGCUAGAGAUCCCAAUCGAUUUCAAGGGGUGGGA---UUCCAAAAUGAAUAAAUUAUAACCGAUAA------------- ....(((((((.((((((((((((((........)))).))).))))))).)))))))((.((((.(---(((......))))...))))..)).....------------- ( -25.50, z-score = -1.57, R) >consensus UCAGUUGAGCUAGGUUGGGUAUGCCCAAUGUUAUG__GAAGAUCAUAGUC___U_CAUGGCCUAA_A___U_ACUUAAUUAUUUAAGCAGCCUAUUUAAAA___________ ........(((..((((((....)))))).(((((.....(((....))).....))))).........................)))........................ ( -7.12 = -7.12 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:30 2011