| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,667,050 – 20,667,142 |
| Length | 92 |
| Max. P | 0.902363 |
| Location | 20,667,050 – 20,667,142 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 70.79 |
| Shannon entropy | 0.52225 |
| G+C content | 0.54023 |
| Mean single sequence MFE | -31.87 |
| Consensus MFE | -12.44 |
| Energy contribution | -13.64 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20667050 92 + 24543557 -------AGCAGGCAGCGGGUCU--UGGGUAUUGGGUAUUGGGUCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGUUGCGAC -------.....((((((((((.--..((..((((((((((((((((((..........))))))))))))))))))..))......))))).)))))... ( -41.70, z-score = -4.50, R) >droSim1.chr3L 20020795 85 + 22553184 -------AGCAGGCAGCGGGUCU--UGGGUAUUGGG-------UCUUGGUUUACUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGUUGCGAC -------.....(((((((((((--(((((((((((-------((((((..........))))))))))))))))))..........))))).)))))... ( -36.70, z-score = -3.77, R) >droSec1.super_11 556521 85 + 2888827 -------AGCAGGCAGCGGGUCU--UGGGUAUUGGG-------UCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGUUGCGAC -------.....(((((((((((--(((((((((((-------((((((..........))))))))))))))))))..........))))).)))))... ( -36.70, z-score = -3.72, R) >droYak2.chr3L 4315473 85 - 24197627 -------AGCAGGCAGCAGGCAG--CGGGUCUUGGG-------UCUUGGUUUUCUGAUUCCGAGGCUCAAUAUACGACUCCAUCUCCGACUCAGUUGAGAC -------....((.((..((.((--((..(.(((((-------((((((..........))))))))))).)..)).))))..))))..(((....))).. ( -24.90, z-score = -0.01, R) >droEre2.scaffold_4784 20359894 92 + 25762168 AGCAGGCAGCAGGCAGCAGGCUG--CGGGUCUUGGG-------UCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUGUCAUACUCAGCUGAGAC .((((.(.((.....)).).)))--)((((.(((((-------((((((..........))))))))))).))))(((.....)))...(((....))).. ( -35.30, z-score = -1.76, R) >droWil1.scaffold_180949 2356676 81 + 6375548 -------GGCAGGCAACGGGUCCCCUUAGCAUCUCCUUGUACUUCCCGCCAUCUCGGCUUUUGGGCUCCAUCU-CAAUUCCAUUUUCAA------------ -------(((.(....)(((........(((......)))....)))))).....((...(((((......))-)))..))........------------ ( -15.90, z-score = 0.19, R) >consensus _______AGCAGGCAGCGGGUCU__UGGGUAUUGGG_______UCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGUUGCGAC ...........((.((..((.....(((((((((((.......((((((..........)))))))))))))))))...))..)))).............. (-12.44 = -13.64 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:29 2011