| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,646,170 – 20,646,268 |
| Length | 98 |
| Max. P | 0.515842 |
| Location | 20,646,170 – 20,646,268 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 88.66 |
| Shannon entropy | 0.21741 |
| G+C content | 0.52551 |
| Mean single sequence MFE | -33.23 |
| Consensus MFE | -26.77 |
| Energy contribution | -26.38 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20646170 98 + 24543557 UAUUUCGCUUAAGGUUUCUUCCCAGGUCGUC-GACGACGAGCAAUAUUCAUAGAGGUCGUCGUGUCGCGGCCACAUGAGAGAUC---AUCUCGUCCUGAGCU ......(((((.((..........(((((.(-((((((((.(..((....))..).)))))..)))))))))..((((((....---.))))))))))))). ( -33.10, z-score = -2.05, R) >droSim1.chr3L 19998554 98 + 22553184 UAUUUCGCUUAAGGUUUCUUCCCAGGUCGAC-GACGGCGAGCAAUAUUCAUAGAGGUCGUCGUGUCGCGGCCACAUGAGAGAUC---AUCUCGUCCUGAGCU ......(((((.((..........(((((.(-((((((((.(..((....))..).)))))..)))))))))..((((((....---.))))))))))))). ( -32.50, z-score = -1.45, R) >droSec1.super_11 535516 98 + 2888827 UAUUUCGCUUAAGGUUUCUUCCCAGGUCGAC-GACGGCGAGCAAUAUUCAUAGAGGUCGUCGUGUCGCGGCCACAUGAGAGAUC---AUCUCGUCCUGAGCU ......(((((.((..........(((((.(-((((((((.(..((....))..).)))))..)))))))))..((((((....---.))))))))))))). ( -32.50, z-score = -1.45, R) >droYak2.chr3L 4293785 98 - 24197627 CAUUUUGCUUAAGGUUUCUUCCCAGGUCGAC-GACGGCGAGCAAUAUUCAUAGAGGUCGUCGUGUCGCGGCCACAUGAGAGAUC---AUCUCGUCCUGAGCU ......(((((.((..........(((((.(-((((((((.(..((....))..).)))))..)))))))))..((((((....---.))))))))))))). ( -32.20, z-score = -1.48, R) >droEre2.scaffold_4784 20339532 98 + 25762168 UAUUGUGCUUAGGGUUUCUUCCCAGGUCGGC-GACGGCGGGCAAUAUUCAUAGAGGUCGUCGUGUCGCGGCCACAUGAGAGAUC---AUCUCGACCUGAGCU ......(((((((...........(((((.(-((((((((.(..((....))..).)))))..)))))))))...(((((....---.))))).))))))). ( -35.50, z-score = -1.32, R) >droAna3.scaffold_13337 10998104 98 + 23293914 AUUUUCGUUU----UUUAAUCCCGGGUCGACUGGCGGCGAGCAAUAUUCAUAGAGGUCGCCGUGUCGCGGCUACAUGAGAGAUCUGGGAUCUGCCCUGGGAU ..........----....((((((((..(((..(((((((.(..((....))..).))))))))))((((...((.((....))))....)))))))))))) ( -33.60, z-score = -0.73, R) >consensus UAUUUCGCUUAAGGUUUCUUCCCAGGUCGAC_GACGGCGAGCAAUAUUCAUAGAGGUCGUCGUGUCGCGGCCACAUGAGAGAUC___AUCUCGUCCUGAGCU ......(((((.((..........(((((....(((((((.(..((....))..).)))))))....)))))......(((((....)))))..))))))). (-26.77 = -26.38 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:28 2011