| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,627,566 – 20,627,632 |
| Length | 66 |
| Max. P | 0.888036 |
| Location | 20,627,566 – 20,627,632 |
|---|---|
| Length | 66 |
| Sequences | 11 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 84.80 |
| Shannon entropy | 0.30942 |
| G+C content | 0.37477 |
| Mean single sequence MFE | -9.27 |
| Consensus MFE | -7.60 |
| Energy contribution | -7.60 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20627566 66 + 24543557 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUGGUCUAAUGCUCUCCCGCUC-- ..(.((((((((.(((.......))).)))))))).).....(-(((......))))..........-- ( -9.40, z-score = -1.52, R) >droSim1.chr3L 19980075 66 + 22553184 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUGGUCUAAUGCUCUCCCGCUC-- ..(.((((((((.(((.......))).)))))))).).....(-(((......))))..........-- ( -9.40, z-score = -1.52, R) >droSec1.super_11 516940 66 + 2888827 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUGGUCUAAUGCUCUCCCGCUC-- ..(.((((((((.(((.......))).)))))))).).....(-(((......))))..........-- ( -9.40, z-score = -1.52, R) >droYak2.chr3L 4274532 66 - 24197627 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUGGUCUAAUGCUCUCCCGCUC-- ..(.((((((((.(((.......))).)))))))).).....(-(((......))))..........-- ( -9.40, z-score = -1.52, R) >droEre2.scaffold_4784 20321383 66 + 25762168 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUGGUCUAAUGCUCUCCCGCUC-- ..(.((((((((.(((.......))).)))))))).).....(-(((......))))..........-- ( -9.40, z-score = -1.52, R) >droAna3.scaffold_13337 10979225 68 + 23293914 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUGGUCUAAUGCCCUCUCUCUCUC ..(.((((((((.(((.......))).)))))))).).....(-(((......))))............ ( -9.00, z-score = -2.07, R) >dp4.chrXR_group8 8050480 66 + 9212921 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUGGUAUGG-CUAUAUCUUUGCCGCUC-- ..(.((((((((.(((.......))).)))))))).)..........((-(.........)))....-- ( -11.60, z-score = -1.46, R) >droPer1.super_40 243402 66 + 810552 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUGGUAUGG-CUAUAUCUUUGCCGCUC-- ..(.((((((((.(((.......))).)))))))).)..........((-(.........)))....-- ( -11.60, z-score = -1.46, R) >droVir3.scaffold_13049 6517641 51 - 25233164 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUUG-C-AU--------------- ..(.((((((((.(((.......))).)))))))).)......-.....-.-..--------------- ( -7.60, z-score = -1.40, R) >droMoj3.scaffold_6680 12517312 52 + 24764193 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUUGCCCA---------------- ..(.((((((((.(((.......))).)))))))).)......-.........---------------- ( -7.60, z-score = -1.75, R) >droGri2.scaffold_15110 5376401 51 - 24565398 UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG-UAUUGCCC----------------- ..(.((((((((.(((.......))).)))))))).)......-........----------------- ( -7.60, z-score = -1.81, R) >consensus UCGUUCAAAGUUCGUGUCAACAUCAUCAAUUUUGAUCAAUAUG_UAUGGUCUAAUGCUCUCCCGCUC__ ..(.((((((((.(((.......))).)))))))).)................................ ( -7.60 = -7.60 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:24 2011