| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,627,341 – 20,627,439 |
| Length | 98 |
| Max. P | 0.776885 |
| Location | 20,627,341 – 20,627,439 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 67.85 |
| Shannon entropy | 0.61977 |
| G+C content | 0.43429 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -5.87 |
| Energy contribution | -7.71 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20627341 98 + 24543557 CUCACAAAUUAGCUCCAUUACAACGCUGGAACGAUUGAUCGAUCUUGGCUGUGAAAACCAUUUCAAGUGGUUUCAGCAGCCCAAAAACGCAAAAUACA-- ...........((((((.........))))..((((....))))..((((((..(((((((.....)))))))..)))))).......))........-- ( -24.50, z-score = -2.44, R) >droSim1.chr3L 19979850 98 + 22553184 CUCACAAAUUAGCUCCAUUACAUCGCUCGAACGAUCCAUCGAUCUUGGCUGUGAAAACCAUUUCAAGUGGUUUCAGCAGCCCAGAAACGAAAAAUACA-- ......................(((.((((........))))(((.((((((..(((((((.....)))))))..)))))).)))..)))........-- ( -25.70, z-score = -3.47, R) >droSec1.super_11 516715 98 + 2888827 CUCACAAAUUAGCUCCAUUACAUCGCACGAACGAUCCAUCGAUCUUGGCUGUGAAAACCAUUUCAAGUGGUUUCAGCAGCCCAGAAACGCAAAAUACA-- ........................((.....(((....))).(((.((((((..(((((((.....)))))))..)))))).)))...))........-- ( -25.80, z-score = -3.58, R) >droYak2.chr3L 4274312 98 - 24197627 CUCCCAAAUUAGCUCCAUUACAGAGUCCGUCCGAUCCAUCGAUCUUGGCUGUGAAAACCAUUUCAAGUGGUUUCAGCAGCCCAAAAACGCAAAAUACA-- ...........((((.......)))).(((..((((....))))..((((((..(((((((.....)))))))..)))))).....))).........-- ( -24.00, z-score = -3.46, R) >droEre2.scaffold_4784 20321163 98 + 25762168 CUCCCAAAUUAGCUCCAUUACAGAGUCCGUCCGAUCCAUCGAUCUUGCCUGUGAAAUCCAUUUCAAGUGGUUUCAGCAGCCCGAAAACGCAAAAUACA-- ...........((((.......))))......((((....))))((((((((((((.((((.....))))))))).))).........))))......-- ( -15.80, z-score = -0.75, R) >droVir3.scaffold_13049 6517321 94 - 25233164 --CUUCAAUUAGCU---UAAGAUACGCCGAACGAUCGAUAGUUGGUUGAUGGUGAUAUUGUGGCCAGAGCUGAAAGCC-AUUCAAUGGCCAGUGUGCCCA --..((((((((((---...(((.((.....)))))...))))))))))(((..((((..((((((....((((....-.)))).))))))))))..))) ( -28.00, z-score = -1.77, R) >droGri2.scaffold_15110 5376036 82 - 24565398 --CUUCAAUUAGCU---UUAGAUACAUCCAACGAUC----GUUGCUUAAUGAUGAUAUCGUGGCCUGAGCUAAAAGCCCAUUCAAAAUCAA--------- --.........(((---((.((((((((((((....----))))......)))).)))).((((....)))))))))..............--------- ( -14.50, z-score = -0.95, R) >consensus CUCACAAAUUAGCUCCAUUACAUAGCCCGAACGAUCCAUCGAUCUUGGCUGUGAAAACCAUUUCAAGUGGUUUCAGCAGCCCAAAAACGCAAAAUACA__ ............................................((((((((..(((((((.....)))))))..)))).))))................ ( -5.87 = -7.71 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:23 2011