Locus 8150

Sequence ID dm3.chr3L
Location 20,609,620 – 20,609,695
Length 75
Max. P 0.897505
window11214

overview

Window 4

Location 20,609,620 – 20,609,695
Length 75
Sequences 5
Columns 75
Reading direction reverse
Mean pairwise identity 83.56
Shannon entropy 0.27821
G+C content 0.52959
Mean single sequence MFE -21.32
Consensus MFE -17.60
Energy contribution -17.64
Covariance contribution 0.04
Combinations/Pair 1.20
Mean z-score -1.71
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.13
SVM RNA-class probability 0.897505
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 20609620 75 - 24543557
CGAUUUUGUCGAUGCCGGCACCGCAGAAUGCUGGCUAAGCUAAAGCCAGUCAAAAAAUAUUCAAGAGCCAGGCUG
((((...))))..((((((.(....(((((((((((.......)))))))........))))..).))).))).. ( -19.70, z-score =  -0.55, R)
>droEre2.scaffold_4784 20303683 67 - 25762168
--------CGAAUGCCGGCACCGCAGAAGGCUGGCUAAGCCAAAGCCAGUCAAAAAACAUUUAAGAGCCAGGUUG
--------.....((((((.........((((((((.......))))))))......(......).))).))).. ( -19.40, z-score =  -1.34, R)
>droYak2.chr3L 4255680 67 + 24197627
--------CGAAUGCCGGCACCGCAGAAGGCUGGCUAAGCCAAAGCCAGUCGAAAAACAUUCAAGAGCCGAGUUG
--------.....((((((.........((((((((.......))))))))(((.....)))....)))).)).. ( -21.70, z-score =  -2.22, R)
>droSec1.super_11 499255 75 - 2888827
CGAUUUAGUCGAUGCCGGCACCGCAGAAGGCUGGAUAAGCCAAAGCCAGCCAGAAGACAUUCAAGAGCCAGGUAG
((((...)))).(((((((.........((((((...........)))))).(((....)))....))).)))). ( -22.60, z-score =  -2.58, R)
>droSim1.chr3L 19962291 75 - 22553184
CGAUUUAGUCGAUGCCGGCACCGCAGAAGGCUGGCUAAGCCAAAGCCAGCCAAAAAACAUUCAAGAGCCAGGUUG
((((...))))..((((((.........((((((((.......))))))))......(......).))).))).. ( -23.20, z-score =  -1.84, R)
>consensus
CGAUUU_GUCGAUGCCGGCACCGCAGAAGGCUGGCUAAGCCAAAGCCAGUCAAAAAACAUUCAAGAGCCAGGUUG
.............((((((.........((((((((.......))))))))......(......).))).))).. (-17.60 = -17.64 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:22 2011