| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,590,053 – 20,590,158 |
| Length | 105 |
| Max. P | 0.648203 |
| Location | 20,590,053 – 20,590,158 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 89.74 |
| Shannon entropy | 0.19055 |
| G+C content | 0.45190 |
| Mean single sequence MFE | -30.36 |
| Consensus MFE | -25.45 |
| Energy contribution | -25.29 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20590053 105 - 24543557 CGGAGAAAGCUGAUUUCUCAGACUCCUGCGGCGCUGCUUUGCCCGAUGGCAAUCAAUAAAAAGUAGCCA-U---AGUAUCUGCUAGAUGAAUGUGUCGCAUAAAAUGUA .((((....((((....)))).))))(((((((((((((((((....)))).........)))))))((-(---..((((.....)))).))).))))))......... ( -30.50, z-score = -1.70, R) >droSim1.chr3L 19941559 105 - 22553184 CGGAGAAAGCUGAUUUCUCAGACUCCUGCGGCGCUGCUUUGCCCGAUGGCAAUCAAUAAAAAGUAGCCG-C---AGUAUCUGCUAGAUGAAUGUGUCGCAUAAAAUGUA .((((....((((....)))).))))(((((((((((((((((....)))).........))))))).(-(---((...))))...........))))))......... ( -32.30, z-score = -1.74, R) >droSec1.super_11 479915 105 - 2888827 CGGAGAAAGCUGAUUUCUCAGACUCCUGCGGCGCUGCUUUGCCCGAUGGCAAUCAAUAAAAAGUAGCCA-C---AGUAUCUGCUAGAUGAAUGUGUCGCAUAAAAUGUA .((((....((((....)))).))))(((((((((((((((((....)))).........))))))).(-(---(.((((.....))))..)))))))))......... ( -31.10, z-score = -1.75, R) >droYak2.chr3L 4236526 106 + 24197627 CGGAGAAAGCUGAUUUCUCAGACUCCUGCGGCGCUGCUUUGCCCGAUGGCAAUCAAUAAAAAGUAGUCAGU---AGUAUUUGCUGGAUAAAUGUGUCGCAUAAAAUGUA .((((....((((....)))).))))((((((((((..(((((....))))).))...........(((((---((...)))))))......))))))))......... ( -30.40, z-score = -1.68, R) >droEre2.scaffold_4784 20284324 105 - 25762168 CGGAGAAAGCUGAUUUCUCAGACUCCUGCGGCGCUGCUUUGCCCGAUGGCAAUCAAUAAAAAGUAGUCA-U---AGUAUCUGCUGGAUAAAUGUGUCGCAUAAAAUGUA .((((....((((....)))).))))((((((((((..(((((....))))).))......(((((...-.---.....)))))........))))))))......... ( -29.60, z-score = -1.60, R) >droAna3.scaffold_13337 10941832 109 - 23293914 CGGAGAAAGCUGAUUUCUCAGACUCCUGUGGUGCAGUUUCGCCCGAUGCCCAAUGCCCGAUGGCAAUCAAUAAAAGCAUCUGCUGGAUAAAUGUGUCGCAUAAAAUGUA .((((....((((....)))).))))(((((..((..((((.(.(((((....((((....))))..........))))).).))))....))..)))))......... ( -28.24, z-score = -0.63, R) >consensus CGGAGAAAGCUGAUUUCUCAGACUCCUGCGGCGCUGCUUUGCCCGAUGGCAAUCAAUAAAAAGUAGCCA_U___AGUAUCUGCUAGAUAAAUGUGUCGCAUAAAAUGUA .((((....((((....)))).))))((((((((....(((((....))))).........(((((.............)))))........))))))))......... (-25.45 = -25.29 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:20 2011