| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,555,487 – 20,555,579 |
| Length | 92 |
| Max. P | 0.978010 |
| Location | 20,555,487 – 20,555,579 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 91.41 |
| Shannon entropy | 0.14371 |
| G+C content | 0.51619 |
| Mean single sequence MFE | -21.54 |
| Consensus MFE | -18.58 |
| Energy contribution | -19.02 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20555487 92 + 24543557 GUAUUUACAGAUGCUCCCACUCUCCGGCGCUCUGUCGCUGCAUCUCUGAAUCUCUGAAUCUCGGAAUCUGAAUCUGUGUCUGUGAAUCCCUG ..((((((((((((..........(((((......)))))....((.((...((((.....)))).)).))....))))))))))))..... ( -21.30, z-score = -2.43, R) >droSim1.chr3L 19907264 84 + 22553184 GUAUUUACAGAUGCUCCCACUCUCCGGCGCUCUGUCGCUGCAUCUCUGA--------AUCUCGGAAUCUGAAUCUGUGUCUGUGAAUCCCUG ..((((((((((((..........(((((......)))))....((((.--------....))))..........))))))))))))..... ( -21.00, z-score = -2.70, R) >droSec1.super_11 445763 84 + 2888827 GUAUUUACAGAUGCUCCCACUCUCCGGCGCUCUGUCGCUGCAUCUCUGA--------AUCUCGGAAUCUGAAUCUGUGUCUGUGAAUCCCUG ..((((((((((((..........(((((......)))))....((((.--------....))))..........))))))))))))..... ( -21.00, z-score = -2.70, R) >droYak2.chr3L 4199938 90 - 24197627 GUAUUUACAGAUGCUCCCACUCUCCGGCGCUCUGUCGCUGCAUCUCUGAAUCUCGGAAUCC--GAAUCUGUGCCUGUGUCUGUGAAUCCCUG ..((((((((((((...(((....(((((......)))))....((((.....))))....--......)))...))))))))))))..... ( -24.00, z-score = -3.19, R) >droEre2.scaffold_4784 20249360 84 + 25762168 GUAUUUGCAGAUGCUCCCACUCUCCGGCGCUCUGUCGCUGCAUCUCUGA--------AUCUCGGAAUCUGAAUCUGUGUCUGUGAAUCCCUG ..(((..(((((((..........(((((......)))))....((((.--------....))))..........)))))))..)))..... ( -20.40, z-score = -2.09, R) >consensus GUAUUUACAGAUGCUCCCACUCUCCGGCGCUCUGUCGCUGCAUCUCUGA________AUCUCGGAAUCUGAAUCUGUGUCUGUGAAUCCCUG ..((((((((((((..........(((((......)))))....(((((...........)))))..........))))))))))))..... (-18.58 = -19.02 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:14 2011