| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,551,252 – 20,551,363 |
| Length | 111 |
| Max. P | 0.602221 |
| Location | 20,551,252 – 20,551,363 |
|---|---|
| Length | 111 |
| Sequences | 10 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 83.85 |
| Shannon entropy | 0.33099 |
| G+C content | 0.39570 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -20.36 |
| Energy contribution | -21.20 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20551252 111 - 24543557 --GUUUCUGUUGCCAGAAUUGCGCGAGUGGCGCAGAUAACAGCACAAAAUGUUGGCAGCCCUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGCUUAUUUUUU --......((((((....((((((.....))))))..((((........))))))))))((....(((((.(((((((((....))))))))).)))))..)).......... ( -33.50, z-score = -1.88, R) >droSim1.chr3L 19903030 113 - 22553184 GUUCUUCUGUUGCCAGAAUUGCGCGAGUGGCGCAGAUAACAGCACAAAAUGUUGGCAGCCCUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGCUUAUUUUUU ........((((((....((((((.....))))))..((((........))))))))))((....(((((.(((((((((....))))))))).)))))..)).......... ( -33.50, z-score = -1.74, R) >droSec1.super_11 441526 113 - 2888827 GUUCUUCUGUUGCCAGAAUUGCGCGAGUGGCGCAGAUAAAAGCACAAAAUGUUGGCAGCCCUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGCUUAUUUUUU ........((((((....((((((.....)))))).....((((.....))))))))))((....(((((.(((((((((....))))))))).)))))..)).......... ( -32.60, z-score = -1.56, R) >droYak2.chr3L 4195528 111 + 24197627 --GUUUCUGUAGCCAGAAUUGCGCGAGUGGCGCAGAUAACAGCACAAAAUGUUGGCAGCCCUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGCUUAUUUUUU --..(((((....)))))((((((.....))))))....(((((.....)))))..((((.....(((((.(((((((((....))))))))).)))))..))))........ ( -32.70, z-score = -1.70, R) >droEre2.scaffold_4784 20245262 110 - 25762168 --GUUUC-GUUGCCAGAAUUGCGCGAGUGGCGCAGAUAACAGCACAAAAUGUUGGCAGCCCUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGCUUAUUUUUU --.....-((((((....((((((.....))))))..((((........))))))))))((....(((((.(((((((((....))))))))).)))))..)).......... ( -33.80, z-score = -2.05, R) >droAna3.scaffold_13337 10904452 111 - 23293914 --GUUUCUGUUGCCAGAAUUGCGCGAGCGGCGCAGAUAACAGCACAAAAUGUUGGCAGCACUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGCUUAUUUUUU --.....(((((((....((((((.....))))))..((((........))))))))))).....(((((.(((((((((....))))))))).))))).............. ( -33.70, z-score = -1.83, R) >droPer1.super_40 148885 85 - 810552 ----------------------------AGAGCAGAUAACAGCACAAAAUGUUGGCAGCACUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGGUUAUUCUUU ----------------------------..(((((.(..(((((.....)))))..)...)))))(((((.(((((((((....))))))))).))))).............. ( -20.20, z-score = -1.31, R) >droVir3.scaffold_13049 6439909 93 + 25233164 -------UGUUGUUAGAAUUGC-------GCGCAGAUAACAGC--AAAAUGUUGGCAGCACUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGAAUUCUU---- -------((((((((...(((.-------...))).)))))))--).(((((..(((....)))..)))))(((((((((....)))))))))................---- ( -23.90, z-score = -1.09, R) >droMoj3.scaffold_6680 12431068 97 - 24764193 ---AUGUUGUUGUUAGAAUUGC-------GCGCAGAUAACAGC--AAAAUGUUGGCAGCACUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGCAUUCUA---- ---...(((((((((...(((.-------...))).)))))))--))(((((.((((....))))(((((.(((((((((....))))))))).)))))..)))))...---- ( -25.30, z-score = -0.61, R) >droGri2.scaffold_15110 5298404 97 + 24565398 ---AUGUUGUUGUUAGAAUUGC-------UCGCAGAUAACAGC--AAAAUGUUGGCAGCACUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGAUUCCU---- ---.((((((((((.((.....-------))...)))))))))--).(((((..(((....)))..)))))(((((((((....)))))))))................---- ( -25.10, z-score = -1.22, R) >consensus ___UUUCUGUUGCCAGAAUUGCGCGAGUGGCGCAGAUAACAGCACAAAAUGUUGGCAGCACUGUUGACAUUAUGAAUGACAGCGGUUAUUUAUUAUGUCUUGGCUUAUUUUUU ........((((((((....((.......))((........))........))))))))......(((((.(((((((((....))))))))).))))).............. (-20.36 = -21.20 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:13 2011