| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,868,948 – 5,869,051 |
| Length | 103 |
| Max. P | 0.959876 |
| Location | 5,868,948 – 5,869,051 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.73 |
| Shannon entropy | 0.35641 |
| G+C content | 0.40168 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -12.46 |
| Energy contribution | -13.74 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5868948 103 + 23011544 ACACCCAGAAAGUCCUACAUUUCUUCCGCCACUCUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUCUUACUUCUGGGUGAGUUGUAUAUUAGAUG .(((((((((.................((.....((((((......)))))).......))...((((......)))))))))))))................ ( -23.20, z-score = -2.45, R) >droSim1.chr2L 5659347 103 + 22036055 ACACCCACAGAGUCCUACAUUCCAUCCGCCACUUUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUCUGGGUGAGUUGUAUAUUAGAUG .((((((....................((...((((((((......)))))))).....)).(((((((....))))))).))))))................ ( -22.30, z-score = -2.42, R) >droSec1.super_5 3938608 103 + 5866729 ACACCCACAAAGUCCCACAUUCCAUCCGCCACUUUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUCUGGGUGAGUUGUAUUUUAGAUG .((((((....................((...((((((((......)))))))).....)).(((((((....))))))).))))))................ ( -22.30, z-score = -2.84, R) >droYak2.chr2L 8995471 94 - 22324452 ---------ACGCCUUACAUUUCUUCCGCCACUUUUUCGCCAGUAAGCGAAAAGUUUAGGCAAAGUGAUACAUAUUACUUUUGGGUGAAUUGUAUAUUAGAUG ---------......((((.(((.((((((..((((((((......))))))))....)))((((((((....)))))))).))).))).))))......... ( -25.20, z-score = -3.19, R) >droEre2.scaffold_4929 5952840 86 + 26641161 ----------------AGACCCACAACCCCACACUC-CGCCAGCAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUUCGGGCGCGUUGUAUAUUAGAUG ----------------......((((((((......-(((......)))..........(.((((((((....))))))))))))...))))).......... ( -16.40, z-score = -1.37, R) >consensus ACACCCA_AAAGUCCUACAUUCCAUCCGCCACUUUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUCUGGGUGAGUUGUAUAUUAGAUG ..........................((((..((((((((......))))))))........(((((((....)))))))...))))................ (-12.46 = -13.74 + 1.28)
| Location | 5,868,948 – 5,869,051 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 79.73 |
| Shannon entropy | 0.35641 |
| G+C content | 0.40168 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5868948 103 - 23011544 CAUCUAAUAUACAACUCACCCAGAAGUAAGAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAGAGUGGCGGAAGAAAUGUAGGACUUUCUGGGUGU ................(((((((((((...((((.((..((((((....(((((((((....)))))))))..)))))).)).))))...)).))))))))). ( -33.90, z-score = -3.90, R) >droSim1.chr2L 5659347 103 - 22036055 CAUCUAAUAUACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAUGGAAUGUAGGACUCUGUGGGUGU ................((((((.((((..(((((.(((.((((((....(((((((((....)))))))))..))))))))).)))))..))).).)))))). ( -33.20, z-score = -3.76, R) >droSec1.super_5 3938608 103 - 5866729 CAUCUAAAAUACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAUGGAAUGUGGGACUUUGUGGGUGU ................(((((((((((..(((((.(((.((((((....(((((((((....)))))))))..))))))))).)))))..))))).)))))). ( -34.40, z-score = -4.20, R) >droYak2.chr2L 8995471 94 + 22324452 CAUCUAAUAUACAAUUCACCCAAAAGUAAUAUGUAUCACUUUGCCUAAACUUUUCGCUUACUGGCGAAAAAGUGGCGGAAGAAAUGUAAGGCGU--------- .........((((.(((..((.(((((.((....)).)))))(((...((((((((((....)))).)))))))))))..))).))))......--------- ( -21.70, z-score = -2.16, R) >droEre2.scaffold_4929 5952840 86 - 26641161 CAUCUAAUAUACAACGCGCCCGAAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUGCUGGCG-GAGUGUGGGGUUGUGGGUCU---------------- .(((((....((..((((((((((((......(((......)))......)))))(((....))))-).)))))..))..)))))..---------------- ( -21.80, z-score = -0.66, R) >consensus CAUCUAAUAUACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAAGGAAUGUAGGACUUU_UGGGUGU ...............((..(((.((((((..((...))..))))))....((((((((....))))))))..)))..))........................ (-13.88 = -13.60 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:01 2011