| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,529,964 – 20,530,077 |
| Length | 113 |
| Max. P | 0.837131 |
| Location | 20,529,964 – 20,530,077 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.55 |
| Shannon entropy | 0.41383 |
| G+C content | 0.41226 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -17.44 |
| Energy contribution | -17.12 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20529964 113 - 24543557 GCCAUUCCAGACUUUUUUCUGUUAUGGCAAAUGCAAAUGCGAAUGAAAAUGGAAAUGAAAAU-------GGGAAAAGGGAAAUGGGUGGGCGGAAACACCGUUCCUUUUGGUUAAUGGCU (((((((((......((((((((....((..(((....)))..))..))))))))......)-------))))((((((((...((((........)))).))))))))......)))). ( -32.00, z-score = -1.74, R) >droAna3.scaffold_13337 10883893 103 - 23293914 UCCAUUUUCACA---ACUUUGUUGUGGCAAAUGCAAAUGCCA--GGUAGUGGGAAUGGAAAU---------AGAAAUGGAAAUGGGUGGGUGG---UACACUUUUCUUUAUUUAAUGACU ((((((..(((.---((((.((....((....))....)).)--))).)))..))))))...---------..(((((((...(((((.....---..)))))...)))))))....... ( -28.50, z-score = -2.05, R) >droEre2.scaffold_4784 20222045 96 - 25762168 GCCAUUUCAGAC---UUUUCGUUAUGGCAAAUGCAAAUGCGAAUGAAAAUGGAAAU---------------------GGAAAUGGGUGGACGGAAACACUGUUCCUUUUAUUUAAUGGCU ((((((......---..(((((....((....))....)))))...((((((((..---------------------((((...((((........)))).)))))))))))))))))). ( -24.70, z-score = -1.99, R) >droSec1.super_11 420362 117 - 2888827 GCCAUUCCAGAC---UUUCUGUUAUGGCAAAUGCAAAUGCGAAUGUAAAUGGAAAUGAAAAUGGGAAAUGGGAAACGGGAAACGGGUGGGCGGAAACACCGUUCCUUUUGCUUAAUGGCU (((((((((.((---.(((.((....((....))....))))).))...))))).......((((....(((((.(.(....).)...((.(....).)).)))))....)))).)))). ( -32.90, z-score = -1.65, R) >droSim1.chr3L 19881557 103 - 22553184 GCCAUUCCAGAC---UUUCUGUUAUGGCAAAUGCAAAUGCGAAUGAAAAUGGAAAUGAAAAU--------------GGGAAACGGGUGGGCGGAAACACCGUUCCUUUUGCUUAAUGGCU (((((..(((..---...)))..)))))....((....(((((.......((((........--------------.(....).((((........)))).)))).)))))......)). ( -27.70, z-score = -1.20, R) >consensus GCCAUUCCAGAC___UUUCUGUUAUGGCAAAUGCAAAUGCGAAUGAAAAUGGAAAUGAAAAU___________AA_GGGAAAUGGGUGGGCGGAAACACCGUUCCUUUUGCUUAAUGGCU (((((..((((......))))..)))))....((....)).....................................((((...((((........)))).))))............... (-17.44 = -17.12 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:07 2011