| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,522,956 – 20,523,037 |
| Length | 81 |
| Max. P | 0.578924 |
| Location | 20,522,956 – 20,523,037 |
|---|---|
| Length | 81 |
| Sequences | 8 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 79.97 |
| Shannon entropy | 0.38241 |
| G+C content | 0.37215 |
| Mean single sequence MFE | -19.09 |
| Consensus MFE | -10.63 |
| Energy contribution | -12.17 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.578924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20522956 81 - 24543557 UUGGUUUGCUUGUUGGAAUGUGAUUUUCAAGAUCGAU----CGAUAUGUAAAUAUUGAACUUGAAGGGCAUUCAAAUCAGAACGG ...((((....(((.((((((..((((((((.....(----((((((....))))))).)))))))))))))).)))..)))).. ( -18.40, z-score = -1.40, R) >droPer1.super_40 117547 85 - 810552 AUAGAAUGUGGACUAGAGUCUGGAAUUCAAGAUCGAUACGGCUAUAUGCUAAUAUUGAACUUGAAGGGCAUUCAAAUCAGUUUUG ...((((((((((....))))....((((((.((((((.(((.....)))..)))))).))))))..))))))............ ( -23.60, z-score = -2.99, R) >dp4.chrXR_group8 7927881 85 - 9212921 AUAGAAUGUGCACUAGAGUCUGGAAUUCGAGAUCGAUACGGCUAUAUGCUAAUAUUGAACUUGAAGGGCAUUCAAAUCAGUUUUG ...((((((.(.((((...))))..((((((.((((((.(((.....)))..)))))).))))))).))))))............ ( -23.50, z-score = -2.60, R) >droAna3.scaffold_13337 10877134 81 - 23293914 AUAGUUUACUGGGCGGAAUGUGAUUUUCAUGAUCAAU----CGAUAUGCUAAUAUUGAACUUGAAGGGCAUUCGAAUCAAUAUGG .........(((...((((((((((.....))))..(----((((((....))))))).........))))))...)))...... ( -14.10, z-score = -0.00, R) >droEre2.scaffold_4784 20215587 77 - 25762168 UUGGCUUGCUGGAUGGAAUGUGAUUUUCAAGAUCGAU----CGAUAUGUAAAUAUUGAACUUGAAGGGCAA----AUCAGAACGG (((..(((((...(((((......)))))...(((((----((((((....)))))))..))))..)))))----..)))..... ( -16.70, z-score = -1.35, R) >droYak2.chr3L 4163928 77 + 24197627 UUGGCUUGCUGGAUGGAAUGUGAUUUUCAAGAUCGUU----CGAUAUGUAAAUAUUGAACUUGAAGGGCAU----AUCAGAACGG ((((..((((...(((((......))))).....(((----((((((....)))))))))......)))).----.))))..... ( -17.80, z-score = -1.54, R) >droSec1.super_11 413446 81 - 2888827 UUGGCUUGCUGGAUGGAAUGUGAUUUUCAAGAUCGAU----CUAUAUGUAAAUAUUGAACUUGAAGGGCAUUCAAAUCAGAACGG ........((((...((((((..((((((((.(((((----............))))).))))))))))))))...))))..... ( -18.50, z-score = -1.58, R) >droSim1.chr3L 19874612 81 - 22553184 UUGGCUUGCUGGAUGGAAUGUGAUUUUCAAGAUCGAU----CAAUAUGUAAAUAUUGAACUUGAAGGGCAUUCAAAUCAGAACGG ........((((...((((((..((((((((.....(----((((((....))))))).))))))))))))))...))))..... ( -20.10, z-score = -2.12, R) >consensus UUGGCUUGCUGGAUGGAAUGUGAUUUUCAAGAUCGAU____CGAUAUGUAAAUAUUGAACUUGAAGGGCAUUCAAAUCAGAACGG ........((((...((((((..((((((((.(((((................))))).))))))))))))))...))))..... (-10.63 = -12.17 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:06 2011