| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,511,219 – 20,511,330 |
| Length | 111 |
| Max. P | 0.600729 |
| Location | 20,511,219 – 20,511,330 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.30217 |
| G+C content | 0.29087 |
| Mean single sequence MFE | -17.04 |
| Consensus MFE | -12.84 |
| Energy contribution | -14.88 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20511219 111 + 24543557 UAGUAUAAUUUCUGUGGUAGUCAACAACCUUUUCGACAAACAAACAAAGUGCUUUCAAGCAGUCAACCAAAAAGAUUAUACUUUAUGUCAACAAAAUA---------UUUCAACAUUUCG .((((((((((...((((.(((............)))............((((....))))....))))...))))))))))................---------............. ( -17.00, z-score = -2.07, R) >droSim1.chr3L 19860956 120 + 22553184 UGGUAUAAUUUCUUUGGUAGUCAACAACCUUUUGGACAAACAAACAAAGUGCUUUCAAGCAGUCAACCAAAAAGAUUAUACUUUUUGUAAAAAAAAUAAAGAUAAUCUCUCAAUAUUUCG ..(((((((((.((((((.(.(.....((....))..............((((....))))).).)))))).)))))))))(((((((.......))))))).................. ( -20.60, z-score = -2.19, R) >droSec1.super_11 401438 120 + 2888827 UGGUAUAAUUUCUUUGGUAGUCAACAACCUUUUGGACGAACAAACAAAGUGCUUUCAAGCAGUCAACCAAAAAGAUUAUACUUUUUGUCAAAAAAAUAAAGAUAAUCUCUCAAUAUUUCG .((((((((((.((((((.(.(.....((....))..............((((....))))).).)))))).))))))))))..(((((...........)))))............... ( -21.30, z-score = -2.00, R) >droYak2.chr3L 4151952 102 - 24197627 UAGUAUAAUUUC----AUAGUCAACAACCUUUUGGACAA-CAAACAAAGUGCUUUUACGCAGUCUACCAAAAAGAUUAUA-------------GAAUAAAGAUAAUCUUUCAAUAUUUUU .(((((.(((..----((((((.....((....))....-.........(((......)))............)))))).-------------.)))((((.....))))..)))))... ( -10.20, z-score = -0.04, R) >droEre2.scaffold_4784 20203238 120 + 25762168 CAGUAUAAUUUCCUUGGUAGUCAACAACCUUUUGGACAAACAAACAAAGUGCCUUUAAGCAGUCAUCCAAAAAGAUUAUACUCCUUGUCAACAAAAUAAAGAUAAUCUUUCAAUAUUUUU .((((((((((..((((..(.(.....((....))..............(((......)))).)..))))..))))))))))..(((((...........)))))............... ( -16.10, z-score = -0.75, R) >consensus UAGUAUAAUUUCUUUGGUAGUCAACAACCUUUUGGACAAACAAACAAAGUGCUUUCAAGCAGUCAACCAAAAAGAUUAUACUUUUUGUCAAAAAAAUAAAGAUAAUCUUUCAAUAUUUCG .((((((((((.((((((.(.(.....((....))..............(((......)))).).)))))).))))))))))...................................... (-12.84 = -14.88 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:06 2011