| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,492,393 – 20,492,488 |
| Length | 95 |
| Max. P | 0.931086 |
| Location | 20,492,393 – 20,492,488 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 67.03 |
| Shannon entropy | 0.43498 |
| G+C content | 0.34373 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -14.11 |
| Energy contribution | -12.90 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20492393 95 - 24543557 UCUAUAUGACUGUGAAUAAAUAGUGACAUUUUUGCAAAUCACAAUCACAACUUAGAAGUGCGGAUAUGAGAAUAUUGUAAGUAUACAUAUGUAUA ..(((((((((((......)))))..(((.((((((..((..............))..)))))).))).................)))))).... ( -14.64, z-score = 0.57, R) >dp4.Unknown_group_14 32562 83 + 78755 UCUGUAUG--UGGAAAUAGCAAGUCA----UGUGCAAACUAUAUU------UCAGUAAUACGGGGAUAUAUCCUUUCCCCGUAUGCAUGUUUCUA ........--(((((((((((.....----..)))..........------...(((.((((((((.........))))))))))).)))))))) ( -22.80, z-score = -2.64, R) >droPer1.super_106 75280 83 - 146283 UCUGUAUG--UGGAAAUAGCAAGUGA----UGUGCAAACUAUAUU------UCAGUAAUACGGGGAUAUAUCCUUUCCCCGUAUGCAUGUUUCUA ........--((((((((((..(.((----((((.....))))))------.)....(((((((((.........))))))))))).)))))))) ( -23.90, z-score = -2.72, R) >consensus UCUGUAUG__UGGAAAUAGCAAGUGA____UGUGCAAACUAUAUU______UCAGUAAUACGGGGAUAUAUCCUUUCCCCGUAUGCAUGUUUCUA ..........((((((((....((.........))......................(((((((((.........)))))))))...)))))))) (-14.11 = -12.90 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:01 2011