| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,491,719 – 20,491,809 |
| Length | 90 |
| Max. P | 0.786089 |
| Location | 20,491,719 – 20,491,809 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 69.66 |
| Shannon entropy | 0.47352 |
| G+C content | 0.29744 |
| Mean single sequence MFE | -17.61 |
| Consensus MFE | -7.10 |
| Energy contribution | -6.67 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.786089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20491719 90 - 24543557 UAAAAAUGUUUGGAUAUAUUUCAUACAUAUCGUUCGAGGGAUAGCUUUUUAUUAUUGACUCAUUUUAUCUAAUGAGUCAUAUCCCUUUAG-- .....((((.((((.....)))).)))).......((((((((............(((((((((......)))))))))))))))))...-- ( -24.10, z-score = -4.34, R) >droSim1.chr3L 19841469 86 - 22553184 UAAAAAUGUUUGGUUG----UCACACAUAUCGUUCGAGGGCUAGCUUUUUAUUAUAGAUUCAUUUUAUCUAAUGAGUCAUAUCCCUUUAG-- ((((((.(((.((((.----((..((.....))..)).))))))))))))).....((((((((......))))))))............-- ( -15.40, z-score = -1.45, R) >droSec1.super_11 382407 86 - 2888827 UAAAAAUGUUUGGUUG----UCAUACAUAUCGUUCGAGGGCUAGCUUUUUAUUAUAGACUCAUUUUAUCUAAUGAGUCAUAUCCCUUUAG-- ((((((.(((.((((.----((..((.....))..)).))))))))))))).....((((((((......))))))))............-- ( -18.60, z-score = -2.53, R) >droWil1.scaffold_181152 354812 88 - 917333 UAGAUAUGUAUGUAUG----UAUUCGAUAAAAUAUAUGAACUCGCUUUUCAAUUUUAUUUCUUCACACUAAAAAAGCGAAUUUGCUCCAUGC .......(((((((((----((((......))))))))...((((((((......................))))))))........))))) ( -12.35, z-score = -0.50, R) >consensus UAAAAAUGUUUGGAUG____UCAUACAUAUCGUUCGAGGGCUAGCUUUUUAUUAUAGACUCAUUUUAUCUAAUGAGUCAUAUCCCUUUAG__ ........(((((((................)))))))..................((((((((......)))))))).............. ( -7.10 = -6.67 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:40:01 2011