| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,447,605 – 20,447,696 |
| Length | 91 |
| Max. P | 0.873610 |
| Location | 20,447,605 – 20,447,696 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.19 |
| Shannon entropy | 0.62422 |
| G+C content | 0.29616 |
| Mean single sequence MFE | -11.82 |
| Consensus MFE | -7.03 |
| Energy contribution | -7.45 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20447605 91 + 24543557 UGACAACUUCAUACCCAACUCAGAAAAACUAUGUUGAAAUC-UUUUUAACAUGCAUCACCAUCUGAUUAA------AAA-UAUGCAU-AU-UUAGUUAUGA--------------- .........((((......(((((.....(((((((((...-..)))))))))........)))))....------...-))))(((-(.-.....)))).--------------- ( -10.34, z-score = -0.54, R) >droGri2.scaffold_15110 4711080 101 - 24565398 UGACAAUUUCAUACCCUACUCAGAGCAAUUAUGUUGAAAUC-UAUUUAACAUGCAUCACCAUCUGACUAAU-UUCCAAAACAAAAAGAAUGCUUGUUGUGAAA------------- ......((((((.......(((((.....(((((((((...-..)))))))))........))))).....-......(((((.........)))))))))))------------- ( -13.72, z-score = -0.52, R) >droMoj3.scaffold_6680 12337045 99 + 24764193 UGAUAACUACAUAGCAAA-UCAGAGCAAUAAUGUUGAAAUU-UACAGACAAUGCACUACCAUCUGAUUGCUAUACGAGAAUUGCAUUUCCUUCAAUUAUAA--------------- (((.......(((((((.-((((((((....(((.......-.))).....))).......))))))))))))..((((......))))..))).......--------------- ( -15.21, z-score = -0.89, R) >droVir3.scaffold_13049 6344785 99 - 25233164 UGACAACUUCAUACACAACUCAGAACAAUUAUGUUGAAAUC-UGUUUAACAUGCAUCACCAUCUGAU--UU-UGACAAA-CAUUAUUUUUACCUAAUUUGU--UUA---------- ......................(((((((((.((.(((((.-(((((..((...((((.....))))--..-))..)))-))..))))).)).))).))))--)).---------- ( -10.60, z-score = 0.09, R) >droWil1.scaffold_181017 433257 105 - 939937 UGACAAUUUUACAUAGUACACAGAGAAAUUAUGUUGAAAUCCUUUUUAACAUGCAUCACCAUCUGAUAAUC-UCCCAAGUCAAUAGUUUUAUUCUCUUUGUCAUUA---------- ((((((.........(....)((((((..((((((((((....)))))))))).((((.....))))....-...................))))))))))))...---------- ( -17.30, z-score = -1.82, R) >droPer1.super_40 56628 87 + 810552 UGACAACUUCAUACCAAUCUCAGAGCAAUUAUGUUGAAAUC-CUAUUAACAUGCAUCACCAUUUGAUCACA-U---ACUUUAUAAGCUACAG------------------------ .......................(((...((((((((....-...)))))))).((((.....))))....-.---.........)))....------------------------ ( -7.70, z-score = 0.07, R) >dp4.chrXR_group8 7867011 87 + 9212921 UGACAACUUCAUACCAAUCUCAGAGCAAUUAUGUUGAAAUC-CUAUUAACAUGCAUCACCAUCUGAUCACA-U---ACUUUAUAAGCUACAG------------------------ ...................(((((.....((((((((....-...))))))))........))))).....-.---................------------------------ ( -8.62, z-score = -0.24, R) >droAna3.scaffold_13337 10816985 108 + 23293914 UGAUAACUUCAUACCCAACUCAGAACACUUAUGUUGAAAUC-UUUUUAACAUGCAUCACCAUCUGAAUAA------AUCAUAAAUAUAAA-CUAUUCAUUAAACAAAAUAUGAGUA (((.....)))......(((((.......(((((((((...-..)))))))))..........((((((.------..............-.))))))............))))). ( -12.29, z-score = -1.34, R) >droEre2.scaffold_4784 20149210 92 + 25762168 UGACAACUUCAUUCUCAACUCAGAGAAACUAUGUUGAAAUC-UUUUUAACAUGCAUCACCAUCUGAAUAA------AAAAUAUACAA-AU-GUAGUUAUAA--------------- ((((...(((((((((......)))))..(((((((((...-..)))))))))..........))))...------......(((..-..-)))))))...--------------- ( -13.20, z-score = -1.31, R) >droYak2.chr3L 4089542 92 - 24197627 UGACAACUUCAUACCAAACUCAGAGAAACUAUGUUGAAAUC-UUUUUAACAUGCAUCACCAUCUGAAUAA------AAAAUAUACAA-AA-CGAAUUAUUA--------------- ...................(((((.....(((((((((...-..)))))))))........)))))....------...........-..-..........--------------- ( -10.02, z-score = -1.59, R) >droSec1.super_11 342788 92 + 2888827 UGACAACUUCAUACCAAACUCAGAGAAACUAUGUUGAAAUC-UUUUUAACAUGCAUCACCAUCUGAUUAA------AAA-UUUACAUUAU-UUAGUUAUGG--------------- .............(((((((((((.....(((((((((...-..)))))))))........)))))....------(((-(.......))-)).))).)))--------------- ( -11.02, z-score = -0.54, R) >droSim1.chr3L 19804527 91 + 22553184 UGACAACUUCAUACCCAACUCAGAGAAACUAUGUUGAAAUC-UUUUUAACAUGCAUCACCAUCUGAUUAA------AAA-UAUACAU-AU-UUAGUUAUGG--------------- ...................(((((.....(((((((((...-..)))))))))........)))))....------...-....(((-(.-.....)))).--------------- ( -11.82, z-score = -0.94, R) >consensus UGACAACUUCAUACCCAACUCAGAGAAAUUAUGUUGAAAUC_UUUUUAACAUGCAUCACCAUCUGAUUAA______AAAAUAUAAAUUAU_UUAGUUAUGA_______________ ...................(((((.....((((((((........))))))))........))))).................................................. ( -7.03 = -7.45 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:56 2011