| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,410,317 – 20,410,424 |
| Length | 107 |
| Max. P | 0.573437 |
| Location | 20,410,317 – 20,410,424 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 57.58 |
| Shannon entropy | 0.83136 |
| G+C content | 0.38652 |
| Mean single sequence MFE | -20.79 |
| Consensus MFE | -6.93 |
| Energy contribution | -6.45 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20410317 107 + 24543557 -GACUUACAUUUAAGAUGGUCAACGUCGGCCACAUUUUCGUGUGGGCCUUGCUCUUGGUACGUAAAUACACACCGAUCGAUAUCCAUCUAGAAACCAUUAAAUUGCUG------------ -........(((.((((((....((((((((((((....))))))(((........))).............)))).))....)))))).)))...............------------ ( -25.60, z-score = -1.54, R) >droGri2.scaffold_15110 8970516 87 - 24565398 ----UCCAAACAAAAAUGGUCAAAGCUGGCCACAUAAUACUUUUGACUCAGCUUUUGGUAUGCAUUU-----------UGCA------CAUAAUGUUAUAAAUUGUAG------------ ----.....((((...((((((....)))))).((((((.((.(((((........))).(((....-----------.)))------)).))))))))...))))..------------ ( -11.70, z-score = 1.08, R) >droMoj3.scaffold_6680 11059647 92 - 24764193 -----UCCACUGAAAAUGGUCAAAGCUGGCCACAUAAUACUUUUGACUCAGCUUUUGGUAUGGAACG-----------CGCAAUAACGCCAAACGUAUUGAGUUUCAA------------ -----...((..(((.(((((((((.((.........)).))))))).))..)))..)).((((((.-----------..(((((.((.....))))))).)))))).------------ ( -20.20, z-score = -0.74, R) >droVir3.scaffold_13049 13635059 92 + 25233164 -----UCCACUGAAAAUGGUCAAAGCUGGCCACAUAAUAUUUUUGACUCAGCUUUUGGUAUGAAAUU-----------UGCAAAACACGAAAAAGUAUUGAAUUUCAA------------ -----...((..(((.(((((((((.((.........)).))))))).))..)))..)).((((((.-----------..(((.((........)).))).)))))).------------ ( -15.50, z-score = -0.24, R) >droWil1.scaffold_180698 8485073 107 - 11422946 -GACACACCCUCAAGAUGGUCAACAUCGGCCAUAUUUUCCUGCUAAUGCAGGUUUUGGUAAGUUCAA-----------U-UAGUUAAAGUCAAUUUAUUAUACCUCUAACUGUAUAAUUU -(((..........((((.....)))).((((......(((((....)))))...))))........-----------.-........))).....(((((((........))))))).. ( -23.40, z-score = -2.43, R) >droPer1.super_88 113241 99 - 213009 GCAAACACAUCGAAUAUGGCCAACAUUGGCUACGUUUUUAUAUGGACGCUAAUAGUGGUAUGUAUA------------U-UAAUAAAAAGUAAU--ACUAU-UUUCCAAACGGAU----- ........((((((..((((((....))))))..))).....((((....(((((((.(((.(((.------------.-..)))....))).)--)))))-).))))....)))----- ( -17.80, z-score = -0.71, R) >dp4.chrXR_group6 240602 99 - 13314419 GCAAACACAUCGAAUAUGGCCAACAUUGGCUACGUUUUUAUAUGGACGCUAAUAGUGGUAUGUAUA------------U-UAAUAAAAAGUAAU--ACUAU-UUUCCAAACGGAU----- ........((((((..((((((....))))))..))).....((((....(((((((.(((.(((.------------.-..)))....))).)--)))))-).))))....)))----- ( -17.80, z-score = -0.71, R) >droAna3.scaffold_13337 10777627 99 + 23293914 ---AAUAAAAUAAUCAUGGUCAGAUUCGGCCACCUUUUCGUGUGGGCCUUGCUUUUGGUAUGUCCGAUCAU------CUGUACUUAUCUAGAAAUCAUACAGUUUAUG------------ ---..............(((((((((((((((((.....).))))(((........)))....))))..))------))).)))........................------------ ( -17.80, z-score = 0.08, R) >droEre2.scaffold_4784 20110186 101 + 25762168 -GACUUACAUUUAAGAUGGUCAACAUCGGCCACAUUUUCGUGUGGGCCUUGCUCUUGGUAAGUACACCGAC------CGAUUUCCAUCUAGAAAUCAUUAAAUUGGUG------------ -.((((((......((((.....))))((((((((....)))).)))).........)))))).((((((.------.((((((......))))))......))))))------------ ( -29.80, z-score = -2.96, R) >droYak2.chr3L 4048597 97 - 24197627 -GACUUACACUUACGAUGGUCAACAUCGGCCACAUUUUCUUGUGGGCCUUGCUCUUGGUACGUACAC----------CGAUAUGCAUCUAGAAAUGAUUAAAUUGACG------------ -.................(((((.(((((((.(((......))))))).(((..(((((......))----------)))...))).........)))....))))).------------ ( -21.70, z-score = -1.41, R) >droSec1.super_11 304009 101 + 2888827 -GACUUACAUUUAAGAUGGUCAACGUCGGCCACAUUUUCGUGUGGGCCUUGCUCUUGGUACGUACAGACAC------CGAUAUCCAUCUAGAAACCAUUAAAUUGCUG------------ -........(((.((((((.....(((((((((((....))))))(((........)))...........)------))))..)))))).)))...............------------ ( -24.10, z-score = -1.14, R) >droSim1.chr3L 19766795 101 + 22553184 -GACUUACAUUUAAGAUGGUCAACGUCGGCCACAUUUUCGUGUGGGCCUUGCUCUUGGUACGUACAGACAC------CGAUAUCCAUCUAGAAGCCAUUAAAUUGCUG------------ -........(((.((((((.....(((((((((((....))))))(((........)))...........)------))))..)))))).)))...............------------ ( -24.10, z-score = -0.79, R) >consensus _GACUUACAUUUAAGAUGGUCAACGUCGGCCACAUUUUCGUGUGGACCCUGCUCUUGGUAUGUACAG___________UAUAUUCAUCUAGAAAUCAUUAAAUUGCUG____________ ................(((((......))))).............(((........)))............................................................. ( -6.93 = -6.45 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:51 2011