| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,403,677 – 20,403,754 |
| Length | 77 |
| Max. P | 0.761253 |
| Location | 20,403,677 – 20,403,754 |
|---|---|
| Length | 77 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 65.59 |
| Shannon entropy | 0.59347 |
| G+C content | 0.48220 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -4.20 |
| Energy contribution | -3.34 |
| Covariance contribution | -0.85 |
| Combinations/Pair | 1.44 |
| Mean z-score | -3.11 |
| Structure conservation index | 0.16 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20403677 77 - 24543557 AAAAAAGCUCGGUGACGAAAGCUGCCUCCUGGCCGUGUGCAAACACUCGGCAAUUCGCCCACUGAGCUUUCGAAUUU--------------- ...(((((((((((.((((.((((((....))).((((....))))..)))..))))..))))))))))).......--------------- ( -29.40, z-score = -3.83, R) >droSim1.chr3L 19760277 77 - 22553184 AAAAAAGCUCAGUGACGAAAGCUGCCUCCUGGCCGUGUGCAAACACUCGGCAAGUCGCCCACUGAGCUUUCGAAUUU--------------- ...(((((((((((.(((..((((((....))).((((....))))..)))...)))..))))))))))).......--------------- ( -30.50, z-score = -4.12, R) >droSec1.super_11 297582 77 - 2888827 AAAAAAGCUCAGUGACGAAAGCUGCCUCCUGGCCGUGUGAAAACACUCGGCAAGUCGCCCACUGAGCUUUCGAAUUU--------------- ...(((((((((((.(((..((((((....))).((((....))))..)))...)))..))))))))))).......--------------- ( -32.00, z-score = -5.00, R) >droYak2.chr3L 4041079 91 + 24197627 AAAAAAGCUCAGUGACGAAAGCUGCCUCCUGGCCGAGUGCAAACACUCUGCCAGU-GGCCACUAAGCUUUUGAAUUUGAUGCUUUCGAAUUU ..(((((((.((((.(....)..(((..(((((.(((((....))))).))))).-))))))).)))))))((((((((.....)))))))) ( -37.90, z-score = -5.59, R) >droAna3.scaffold_13337 10770188 76 - 23293914 AAAAAAGCUCCUAGAAAAAAGCUG-CUCCUUCCCUUGGGUAAACAUUCUGAAAGUUAGCCAUGGAGCUUUCCAAAUG--------------- ...(((((((((((.......)))-............(((.(((.........))).)))..)))))))).......--------------- ( -14.20, z-score = -0.20, R) >droPer1.super_88 107346 76 + 213009 AGAAAAGCUCACU-CCAAAAGCUGAUAUUUCCCCCCUUGUGACUACGCUGCACAUAGAAUGUGGUGGAGUGGAGCUU--------------- ....(((((((((-(((...((.((....))....((((((.(......))))).))...))..)))))).))))))--------------- ( -20.60, z-score = -1.48, R) >dp4.chrXR_group6 234735 76 + 13314419 AGAAAAGCUCACU-CCAAAAGCUGAUAUUUCCCCCCUUGUGACUACGCUGCACAUAGAACGUGGUGGAGUGGAGCUU--------------- ....(((((((((-(((...((.((....))....((((((.(......))))).))...))..)))))).))))))--------------- ( -20.90, z-score = -1.56, R) >consensus AAAAAAGCUCAGUGACGAAAGCUGCCUCCUGGCCGUGUGCAAACACUCUGCAAGUCGCCCACUGAGCUUUCGAAUUU_______________ .....((((..........))))......................(((((...........))))).......................... ( -4.20 = -3.34 + -0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:50 2011