| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,398,039 – 20,398,150 |
| Length | 111 |
| Max. P | 0.619859 |
| Location | 20,398,039 – 20,398,150 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.74 |
| Shannon entropy | 0.38712 |
| G+C content | 0.32187 |
| Mean single sequence MFE | -23.84 |
| Consensus MFE | -13.46 |
| Energy contribution | -14.68 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.619859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20398039 111 - 24543557 UUUCUCUUUGUA-CGAAAAGAAAGUUAUAAUAGUUUAUAU----UAACGGUAUGCAGCUUGUCUAAUGUUGGACAAGCUUUAGGUAUUUCUUAGUAGUUAUAUGGCCAAUCUUUUC ............-.(((((((..((((((.(((....(((----(((.((.((((((((((((((....))))))))))....)))).)))))))).)))))))))...))))))) ( -26.00, z-score = -2.41, R) >droSim1.chr3L 19754683 111 - 22553184 UUUCUCUUUGUA-CGAAAAGAAAGUUAUAAUAGUUUCUAU----UAACGGUAUGCAGCUUGUCUAAUGUUGGACAGGCUUUAGGUAUUUCUUAGUAGUUAUAUGGCCAAUCUUUUC ............-.(((((((..((((((.(((...((((----(((.((.((((((((((((((....))))))))))....)))).))))))))))))))))))...))))))) ( -27.70, z-score = -2.72, R) >droSec1.super_11 292077 115 - 2888827 UUUCUCUUUGUA-CGAAAAGAAAGUUAUAAUAGUUUCUAUAUUCUAACGGUAUGCAGCUUGUCUAAUGUUGGACAGGCUUUAGGUAUUUCUUAGUAGUUAUAUGGCCAAUCUUUUC ............-.(((((((..((((.((((.......)))).))))(((....((((((((((....))))))))))....((((..((....))..)))).)))..))))))) ( -26.80, z-score = -2.19, R) >droYak2.chr3L 4035552 110 + 24197627 UUUCUCCUGGUA-UUAAAAGAAAGUUAUAAUAGUUUCUAU----UAACGGUAUGC-GCUUGUCUAAUGUUGGACAAGCUUUGGGUAUUUCUGGGUAGUUAUAUGGCAAAUCUUUUC ............-((((.(((((.(......).))))).)----))).(((.(((-(((((((((....)))))))))((..((....))..))..........))).)))..... ( -22.70, z-score = -1.14, R) >droEre2.scaffold_4784 20098174 110 - 25762168 UUUCUCUUUGUA-UGAAAAGAAAGUUAUACAAGUUUCUAU----UAACGGUAUGC-GCUUGUCUAAUGUUGGACAAGCUUUAGGUAUUUCUUGGUAGUUACAUGGCAAAUCUAUUC .......(((((-(((........))))))))((..((((----(((.((.((((-(((((((((....))))))))).....)))).)))))))))..))............... ( -25.70, z-score = -2.22, R) >droAna3.scaffold_13337 10765356 92 - 23293914 UUUCUCUUCACAGCAAAAAGAAAGUUUCGACAGUAGUUACAUAUUAAAGUUA----GCUUGUCUAAUUUUGGACA-------GAAAUUUGUUAGUAGGUUUGC------------- ............(((((....((((((((((..((((.....))))..))).----...((((((....))))))-------))))))).........)))))------------- ( -14.12, z-score = 0.36, R) >consensus UUUCUCUUUGUA_CGAAAAGAAAGUUAUAAUAGUUUCUAU____UAACGGUAUGC_GCUUGUCUAAUGUUGGACAAGCUUUAGGUAUUUCUUAGUAGUUAUAUGGCCAAUCUUUUC (((((.(((.....))).)))))((((((...........................(((((((((....)))))))))..(((.((((....)))).))))))))).......... (-13.46 = -14.68 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:50 2011