| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,388,690 – 20,388,789 |
| Length | 99 |
| Max. P | 0.990353 |
| Location | 20,388,690 – 20,388,789 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 79.78 |
| Shannon entropy | 0.34657 |
| G+C content | 0.49608 |
| Mean single sequence MFE | -27.86 |
| Consensus MFE | -22.58 |
| Energy contribution | -22.78 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20388690 99 - 24543557 UACCACCUACAUAUACUCGU----GUACGUAAGACCCCCGAUUUUUGGCUCUGUGUGCGCCGUGCUCGAGCAUUUUUACCUGUGGUCGAGCACUUUGUUCAGA ..................((----((((...(((.((.........)).)))..)))))).((((((((.(((........))).)))))))).......... ( -28.10, z-score = -2.06, R) >droEre2.scaffold_4784 20088622 87 - 25762168 ----------------UAGCUCCUAUAAGAAAACCCGCCGAAUUUUGGGUCUGUGUGCGCCGUGCUCGAGCAUUUUUACCUGUGGUCGAGCACUUUGUUCAGA ----------------................(((((........)))))(((...(((..((((((((.(((........))).))))))))..))).))). ( -26.90, z-score = -1.93, R) >droYak2.chr3L 4025902 87 + 24197627 ----------------UACCACCUAUAAGUAAGCCCCCCGAUUUUUGGCUCUGUGUGCGCCGUGCUCGUUCAUUUUUACCUGUGGCCGAGCACUUUGUUCAGA ----------------................(((...........)))((((...(((..(((((((..(((........)))..)))))))..))).)))) ( -23.40, z-score = -2.25, R) >droSec1.super_11 282620 102 - 2888827 GACCACCUACAUAUACAUAUACUCGUACGUAAGCCCCCCGA-UUUUGGCUCUGUGUGCGCCGUGCUCGAGCAUUUUUACCUGUGGUCGAGCACUUUGUUCAGA ((.((..................((((((((((((......-....)))).))))))))..((((((((.(((........))).))))))))..)).))... ( -28.80, z-score = -2.26, R) >droSim1.chr3L 19745160 103 - 22553184 UACCACCUACAUGUACAUAUACUUGUACGUAAGCCCCCCGAUUUUUGGCUCUGUGUGCGCCGUGCUCGAGCAUUUUUACCUGUGGUCGAGCACUUUGUUCAGA ..........(((((((......)))))))..(((...........)))((((...(((..((((((((.(((........))).))))))))..))).)))) ( -32.10, z-score = -3.28, R) >consensus _ACCACCUACAU_UACUAAUACCUGUACGUAAGCCCCCCGAUUUUUGGCUCUGUGUGCGCCGUGCUCGAGCAUUUUUACCUGUGGUCGAGCACUUUGUUCAGA .....................................((((...)))).((((...(((..((((((((.(((........))).))))))))..))).)))) (-22.58 = -22.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:49 2011