| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,380,014 – 20,380,110 |
| Length | 96 |
| Max. P | 0.795870 |
| Location | 20,380,014 – 20,380,110 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 61.67 |
| Shannon entropy | 0.64436 |
| G+C content | 0.39071 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -7.70 |
| Energy contribution | -9.18 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.795870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20380014 96 + 24543557 CCUUCGUAAAAAUCGUGCUAAAUCGUGCUUAAAUACGCUUU--UAAUUCGCCUGAUUUGAGGAAUAAGAUGGAUUGAAAUGCGUCGCAUGAUAUAAGU-------- ................(((..(((((((......(((((((--(((((((.((.((((...)))).)).)))))))))).)))).)))))))...)))-------- ( -20.00, z-score = -0.79, R) >droSim1.chr3L 19736450 94 + 22553184 CCUUCGUAAAAA--GUGCUAAACCGUGCUUAAAUACGUUUU--UAAUUCGCCUGAUUUGAGGAAUUAGAUGGAUUGAAAUGCGUCGCAUGAUAUAAAU-------- ...((((...((--(..(......)..)))....(((((((--(((((((.(((((((...))))))).)))))))))).))))...)))).......-------- ( -20.20, z-score = -1.60, R) >droSec1.super_11 273925 82 + 2888827 CCUUCGUAAAAA--GUGCUAAACCGUGCUUAAAUACGCUUU--UAAUUCGCCUGAUUUGAG-AAUUAGAUGGAUUGAAAUGCGUCGC------------------- ..........((--(..(......)..)))....(((((((--(((((((.((((((....-)))))).)))))))))).))))...------------------- ( -21.00, z-score = -2.84, R) >droYak2.chr3L 4016958 89 - 24197627 -CGUUGUUCAAA--GGGCGCCUUAGUCCGUAACUAUGGAUUAGUCCUUAACCAAAUCCAGGGAGUUAGAUGGAUUGAAUUAAGUUCUAAAAC-------------- -..........(--((((...(((((((((((((.((((((.(........).))))))...))))..))))))))).....))))).....-------------- ( -20.60, z-score = -0.98, R) >droEre2.scaffold_4784 20079766 88 + 25762168 ----------------GCGGCUUAGUCCUUAACUACGCUUU--UAAUCCGCCAAAUGUGUGGAAUUAGUCGGACUGAAUUGAGUCACCUCAUCUCAAAUUCCACCU ----------------..(((.((((.....)))).)))..--...((((((....).))))).......(((.(((..((((....))))..)))...))).... ( -19.00, z-score = -1.50, R) >consensus CCUUCGUAAAAA__GUGCUAAAUCGUGCUUAAAUACGCUUU__UAAUUCGCCUGAUUUGAGGAAUUAGAUGGAUUGAAAUGCGUCGCAUGAU_U_A__________ ..............((((......))))......((((.....(((((((.((((((.....)))))).)))))))....))))...................... ( -7.70 = -9.18 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:44 2011