| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,375,263 – 20,375,366 |
| Length | 103 |
| Max. P | 0.796534 |
| Location | 20,375,263 – 20,375,366 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.53 |
| Shannon entropy | 0.36288 |
| G+C content | 0.43024 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -16.91 |
| Energy contribution | -17.19 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20375263 103 + 24543557 GAUAUAUCGGUGUACACUCAACUUGUUCUGCACGAUCCCUCCCAUGGAAUGUGGACAGCCGAAGGACGCAGACAUGUGUAUAUCCAUAUAUUUGUACCUUUAC (((((((.(((((((((......(((.(((((((.(((.......))).)))((....)).......))))))).))))))))).)))))))........... ( -26.40, z-score = -1.04, R) >droSim1.chr3L 19731638 99 + 22553184 GAUAUAUCGGUGUACACUCAACUGGUUCUGCACGAUCCC----AUGGAAUGUGGACAGCUGAAGAACGCAGACAGGUGUAUAUCCAUAUAUUUGUACCUUUAC (((((((.((((((((((...((((((((.(((..((((----((...))).)))..).)).))))).)))...)))))))))).)))))))........... ( -30.30, z-score = -2.34, R) >droSec1.super_11 269151 99 + 2888827 GAUAUAUCGGUGUACACUCAACUGGUUCUGCACGAUCCC----AUGGAAUGUGGACAGCUGAAGGACGCAGACAUGUGUAUAUCCAUAUAUUUGUACCUUUAC (((((((.(((((((((....((((((((.(((..((((----((...))).)))..).)).))))).)))....))))))))).)))))))........... ( -28.80, z-score = -1.66, R) >droYak2.chr3L 4004045 99 - 24197627 GAUAUAUUGGUGUACACUCAACUUGUUCUGCACGAUUCC----AUGGAAAGUGGAAUGCUAAAGGACACAGACAUGUGUAUAUCCUUAUAUUUGUACCUUUAC ((((((..(((((((((....((((((((.....(((((----((.....))))))).....)))))).))....)))))))))..))))))........... ( -28.20, z-score = -2.90, R) >droEre2.scaffold_4784 20074956 99 + 25762168 GAUAUAUUGGUGUACACUCAACUUGUUCUGCACGAUUCC----AGGGAGUGUGGAAAGCUAAAGGACGCAGACAUGUGUAUAUCCUUAUAUUUGUACCUUUAC ((((((..(((((((((....((((((((......((((----(.......)))))......)))))).))....)))))))))..))))))........... ( -24.30, z-score = -0.86, R) >droAna3.scaffold_13337 10742513 86 + 23293914 GAUAUAUCGAUGUACACCUCACCUGGCUCGCCUGGCUCC------GAAGGAU---UCGUCGAAGGA--------GGUGUAUAUCCUUAUACUUGUACCCUGAA ..((((..((((((((((((...((((...(((......------..)))..---..))))...))--------))))))))))..))))............. ( -27.80, z-score = -2.46, R) >consensus GAUAUAUCGGUGUACACUCAACUUGUUCUGCACGAUCCC____AUGGAAUGUGGACAGCUGAAGGACGCAGACAUGUGUAUAUCCAUAUAUUUGUACCUUUAC ((((((..(((((((((.......(((((.((((.(((.......))).)))).........)))))........)))))))))..))))))........... (-16.91 = -17.19 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:43 2011