| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,347,377 – 20,347,497 |
| Length | 120 |
| Max. P | 0.517570 |
| Location | 20,347,377 – 20,347,497 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.43 |
| Shannon entropy | 0.56199 |
| G+C content | 0.47083 |
| Mean single sequence MFE | -36.94 |
| Consensus MFE | -12.21 |
| Energy contribution | -11.42 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20347377 120 + 24543557 UCAUGGACGACUGGAAGAUCCUGGAGAACGUAUUCCACCUUCUCCGGAAGGAGGAUACCUUCUGCGUGGAUCCCCAGAAAUGGGACAAGCAGAAGAUAGUCCCCUUUUUGCAGCCAGACA ..........((((......((((((((.((.....)).))))))))((((.((((..(((((((.((....((((....)))).)).)))))))...)))))))).......))))... ( -45.50, z-score = -3.03, R) >droEre2.scaffold_4784 20047486 120 + 25762168 UCAUGGACGACUGGAAUAUCCUUGAGAACGUUUUCCACCUUCUCCAGAAAGCGGACACCUUCUGCGUAGAUCCCCAGAAAUGGGGAAAGCAGAAGAUAGUCCCCUUUUUGCAGCCAGACA ..........((((.........(((((.((.....)).)))))(((((((.((((..(((((((.....((((((....))))))..)))))))...)))).)))))))...))))... ( -45.30, z-score = -4.74, R) >droYak2.chr3L 3976438 120 - 24197627 UCAUGGAGGACUGGAAUAUCCUGGAGAACGUAUUCCACCUGCUCCAGGAGGAGGACACCUUCUGCGUGGAUCCCCAGAAAUGGGGUAAGCAGAAGAUAGUCCCCUUUUUGCAGCCAGACA .......((.(((.((..((((((((...((.....))...))))))))((.((((..(((((((......(((((....)))))...)))))))...))))))...)).)))))..... ( -51.10, z-score = -3.68, R) >droSec1.super_11 241089 120 + 2888827 UCAUGGACGACUGGAAAAUCCUGGAGAACGUAUUCCACCUGCUCCAGAAGGAGGAUACCUUCUGCGUGGAUCCCCAGAAAUGGGGCAAGCAGAAGAUAGUCCCCUUUUUGCAGCCAGACA ..........((((.......(((((......))))).((((...((((((.((((..(((((((.((...(((((....))))))).)))))))...)))))))))).))))))))... ( -46.40, z-score = -3.37, R) >droSim1.chr3L 19703721 120 + 22553184 UCAUGGACGACUGGAAAAUCCUGGAGAACGUAUUCCGCCUCCUCCAGAAGGAGGAUACCUUCUGCGUGGAUCCCCAAAAAUGGGGCAAGCAGAAGAUAGUCCCCUUUUUGCAGCCAGACA ..........((((......((((((...((.....))...))))))((((.((((..(((((((.((...(((((....))))))).)))))))...)))))))).......))))... ( -41.80, z-score = -2.15, R) >droAna3.scaffold_13337 10712296 120 + 23293914 UCAUGGACGACUGGAAUGUCCUGGAGAACGUGUUUAGAUUGCUCCAACGGGAGGAUACCUUCUGCAUGGAUCCUGAGAAAUGGGGCCAGCAAAAAAUAGUGCCUUUCUUACAGCCGGACA ...((..((.(((....((((((.((((.(((((.......((((....))))))))).)))).)).))))..(((((((.((.((.(........).)).)))))))))))).))..)) ( -33.11, z-score = 0.04, R) >dp4.chrXR_group6 2183543 120 + 13314419 UUAUGGAUGAUUGGAGUAUCCUGGAAAAUGUAUUCAAGCUACUGCAGAAGGACGACACAUUCUGUGUGGACCCCCAAAAAUGGAAUAAGCAGAAAAUCGUAUCAUUUUUGCAGCCAGACG ...(((.......((((((..(....)..))))))......(((((((((.((((....((((((.(((....)))............))))))..))))....)))))))))))).... ( -26.92, z-score = -0.40, R) >droPer1.super_9 475388 120 + 3637205 UUAUGGAUGAUUGGAGUAUCCUGGAAAAUGUAUUCAAGCUACUGCAGAAGGACGACACAUUCUGUGUGGACCCCCAAAAAUGGAAUAAGCAGAAAAUCGUAUCAUUUUUGCAGCCAGACG ...(((.......((((((..(....)..))))))......(((((((((.((((....((((((.(((....)))............))))))..))))....)))))))))))).... ( -26.92, z-score = -0.40, R) >droWil1.scaffold_180698 8405057 120 - 11422946 UAGUUAACGAUUGGAAUAUCCUGGAGAAUGUCUUUCGUUUAAUGCAAAGGGAGGAAACCUUUUGGGCACAACCCCAGCAAUGGGAUGAAGGCAAAAUUGUUGAAUUCUUCCAGCCGGAAA ...(((((((((((.....)).......((((((.(((....(((.(((((.(....))))))..)))....((((....))))))))))))).)))))))))....((((....)))). ( -32.00, z-score = -0.54, R) >droVir3.scaffold_13049 19014463 115 + 25233164 UAAUGAACGAUUGGAAGAUUCUACAGCAUGUCUUCAAGCUGGUAGAAAAGGAGGAUACUUUUUGUGCCAAUCCAGAACUAUGGAGGGAACAGAAAAUAGUCGAUUUUAUGCAGCC----- .......((((((.....(((((((((.((....)).))).))))))...........(((((((.((..((((......)))).)).))))))).)))))).............----- ( -27.20, z-score = -1.12, R) >droMoj3.scaffold_6680 12544309 120 - 24764193 UAAUGGACGAUUGGAGGAUUCUACAGAAUGUCUUCAAGCUGGUGCAGCGCGAGGAGACUAUCUGUGCCGAUCCACAACAAUGGCAGCAACAGAAAAUAGUCGAUUUUAUGCAGCCAGACG ...(((((..(((((((((((....)))).)))))))...((..(((....((....))..)))..))).))))......((((.(((....(((((.....))))).))).)))).... ( -34.30, z-score = -1.40, R) >droGri2.scaffold_15110 16704041 120 + 24565398 UAAUGAACGAUUGGAAAAUUCUACAACAUGUCUUCAAGCUGGUGCAAAGGGACGAAACUCUCUGUGCCGAUCCGCAGCAGUGGAAGGAACAGAAAAUAAUCGACUUUAUGCAGCCGGAGG ...((((.(((((((....))))......)))))))..((((((((.((((.(((.....(((((.((..(((((....))))).)).)))))......))).)))).)))).))))... ( -32.70, z-score = -1.48, R) >consensus UCAUGGACGACUGGAAUAUCCUGGAGAACGUAUUCAACCUGCUCCAGAAGGAGGAUACCUUCUGCGUGGAUCCCCAGAAAUGGGACAAGCAGAAAAUAGUCCCCUUUUUGCAGCCAGACA ..........((((....((((..........................))))......(((((((.((...((........))..)).)))))))..................))))... (-12.21 = -11.42 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:42 2011