| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,346,600 – 20,346,706 |
| Length | 106 |
| Max. P | 0.629565 |
| Location | 20,346,600 – 20,346,706 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 68.50 |
| Shannon entropy | 0.57819 |
| G+C content | 0.42165 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -12.85 |
| Energy contribution | -13.72 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20346600 106 - 24543557 ---ACAC-UGCGGCUCAGAAACGAGUUUCAGCUCACCAGAUGUAUCUGAGCG-AUUCUUAGAUGCAAA--UCAAGGGCGAAACAAGUACUACGAGUGCUUUUUGCUGUCGUCC--- ---....-.(((((.(((((....(((((.((((......((((((((((..-...))))))))))..--....))))))))).(((((.....))))))))))..)))))..--- ( -32.80, z-score = -1.78, R) >droSim1.chr3L 19702905 100 - 22553184 ---GCAC-UGCGGCUCAGAAACAAGUUUCAGCUCACCAGAUGUAUCUGAGCG-AUUCUUAGAUGCAAA--UCAAG------ACAAGUACUACUAGUGCUUGUUGUUGUCGUCC--- ---....-.(((((...((((....))))(((........((((((((((..-...))))))))))..--....(------((((((((.....)))))))))))))))))..--- ( -29.50, z-score = -1.70, R) >droSec1.super_11 240287 100 - 2888827 ---GCGC-UGCGGCUCAGAAACAAGUUUCAGCUCACCAGAUGUAUCUGAGCG-AUUCGUAGAUGCAAA--UCAAG------ACAAGUACUACUAGUGCUUGUUGUUGUCGUCC--- ---((((-(((((((((((.((((((....))).......))).))))))).-...))))).)))...--....(------((((((((.....)))))))))..........--- ( -31.61, z-score = -1.98, R) >droYak2.chr3L 3975845 106 + 24197627 ---GUAC-AGAUACUCAGAAACUAGUUUCAGCUCACCAGAUGUAUCUAUCCG-AUUCUUAGAUGCAAA--UGAAGCGCAAUACAAGUGCUA---GUGCUUGUACUUGUUGUCGGUC ---....-.((((....((((....)))).(((...((..((((((((....-.....))))))))..--)).)))((((((((((((...---.)))))))).)))))))).... ( -25.10, z-score = -0.56, R) >droEre2.scaffold_4784 20046225 105 - 25762168 ---GCAU-UGCGGCUCAGAAACAAGUUUCACCUCACCAGAUGUAUCUAUCCG-AUUCCUAGAUGCAAAUCUCAAGCGCAAAACAAGUGCUA---GUGCUUGUAGUUGUUGUCC--- ---....-...(((.(((..((((((..(...........((((((((....-.....)))))))).......(((((.......))))).---).))))))..)))..))).--- ( -22.70, z-score = -0.48, R) >droAna3.scaffold_13337 10711568 98 - 23293914 GUAGUAUACGUUGCUUGAAAACAAGUUUAGGCUUUCAUCACACUUCAAAUUGAAUUCUUUGGGAUAUAAAUAAAAUA-AAAACAAAUGCAA-AAAUAGUC---------------- ...((((..((((((((((......)))))))(..((......(((.....))).....))..).............-..)))..))))..-........---------------- ( -10.00, z-score = 0.66, R) >consensus ___GCAC_UGCGGCUCAGAAACAAGUUUCAGCUCACCAGAUGUAUCUAAGCG_AUUCUUAGAUGCAAA__UCAAG_G_AAAACAAGUACUA__AGUGCUUGUUGUUGUCGUCC___ .........(((((...((((....))))...........((((((((..........))))))))...............((((((((.....))))))))....)))))..... (-12.85 = -13.72 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:41 2011