| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,313,128 – 20,313,224 |
| Length | 96 |
| Max. P | 0.832457 |
| Location | 20,313,128 – 20,313,224 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 60.28 |
| Shannon entropy | 0.64537 |
| G+C content | 0.45131 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -11.00 |
| Energy contribution | -11.56 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20313128 96 - 24543557 -------------------------ACAUGUGACGAAAAUAUAGCGGUACAGUGAGACUUCCCCAUUGUGCUGCUUACUUGACGUAUCCUGACAGAUUUUAGUUCCUGGCCGUGACGUUAG -------------------------..((((.(((.......((((((((((((.(......))))))))))))).................(((..........)))..))).))))... ( -24.00, z-score = -1.30, R) >droEre2.scaffold_4784 23510429 96 - 25762168 -------------------------ACAUGUGGCGGAGAAUUAGCGUUUGAGCGAGAGUUCCCAAUAGUGCUGUUUUUUUGAGGUGGGUUGACAGAUUUUAGUUCUUGGUCGCGCCGCUAG -------------------------....(((((.(((((((((.((((((((....)))((((.(((..........)))...))))....))))).))))))))).)))))........ ( -26.20, z-score = -0.44, R) >droSec1.super_11 221409 82 - 2888827 -------------------------ACAUGUGACGAAAGUAAAGCGGUACAGUGAGACUUCCCCAUUGUGCUGCUUACUU--------------GAUUUUAGUUCCUGGCCGUGACGCGAG -------------------------.(.(((.(((.((((((.(((((((((((.(......))))))))))))))))))--------------.......((.....))))).))).).. ( -25.00, z-score = -2.37, R) >droSim1.chr3L 19684090 96 - 22553184 -------------------------ACAUGUGACGAAAGUAAAGCGGUACAGUGAGACUUCCCCAUUGUGCUGCUUACUUGACGUGUCCUGACAGAUUUUAGUUCCUGGCCGUGACGCUAG -------------------------.((.((.((....)).(((((((((((((.(......)))))))))))))))).))..(((((.((.(((..........)))..)).)))))... ( -29.80, z-score = -2.40, R) >droWil1.scaffold_181122 19747 120 - 82574 AAAACGUAUGUUAAGUCUCUCACAAUCAUACGAAACGAUGAUAGU-CUACAACUGAUCUGCUCAACUAUGCUCUUUUCUUUAUAACUAGUGCUAAAUUUCAAUUCAUGGGUGUUUCCCAAU ....((((((....((.....))...))))))....(((((((((-(.......)).))).))).....((.((.............)).))......))......((((.....)))).. ( -14.42, z-score = 0.69, R) >consensus _________________________ACAUGUGACGAAAAUAUAGCGGUACAGUGAGACUUCCCCAUUGUGCUGCUUACUUGACGUGUCCUGACAGAUUUUAGUUCCUGGCCGUGACGCUAG ....................................(((((.((((((((((((.(.....).))))))))))))))))).........................(((((......))))) (-11.00 = -11.56 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:40 2011